Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq20831 432 4e-116 seq3 423 2e-113 seq7 192 6e-44 seq2 132 5e-26 seq6 114 1e-20 >seq20831 Length=3535 Score = 432 bits (478), Expect = 4e-116 Identities = 549/753 (73%), Gaps = 2/753 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| | Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || || | | |||||| | || ||| | |||||| | || || ||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| || |||||||| ||||| ||| |||| ||||| | || || ||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 605 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || || || ||||| || ||||| |||| || || ||| | || || ||||| ||| Sbjct 604 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 545 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| ||||| ||||||| ||||| |||||||| ||||||| |||| | || Sbjct 544 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 485 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 484 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 425 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 | |||||||| || ||||| |||||| || || || || || || ||||| | ||| Sbjct 424 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 365 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 || ||| | | || || | |||||||| ||| || |||| ||||||||| || ||| Sbjct 364 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 305 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| |||| | || |||||||| |||||||| ||||||||||| || Sbjct 304 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 245 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 || |||||| | || || ||||| |||||||| || || || || ||||||||| || Sbjct 244 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGT 185 Query 157651 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | || |||| || | ||| || | ||||| || |||| || || || | || Sbjct 184 TCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 ||||| ||||| ||||||||||| || |||||||| || ||||| || ||||| || || Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAA 157802 || ||||||||||||| ||| |||||||| Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAA 33 >seq3 Length=27950219 Score = 423 bits (468), Expect = 2e-113 Identities = 681/975 (70%), Gaps = 3/975 (0%) Strand=Plus/Minus Query 158811 TTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGC 158870 || |||||||| || |||||||| || | || | || ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 158871 GGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCC 158930 | |||| | || || | || || | || |||||||| |||||| | |||| |||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 158931 TATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGT 158990 ||| | || ||| || ||| || || || |||||||||| ||| || | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 158991 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAA 159050 |||||| | || | || ||||||| ||| || ||| | ||||| | ||| ||| Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627 Query 159051 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATG 159110 | || || |||| | |||||| || ||| |||| || ||||| |||| |||| ||| Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567 Query 159111 CTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTT 159169 | || || |||||||| || || || || | | || || || ||||| || || || Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATT 12152508 Query 159170 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAG 159229 ||||||||| || ||||||||||| ||| |||| || || ||||| ||||| || | Sbjct 12152507 CTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGG 12152448 Query 159230 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACA 159289 |||||| || || || ||||| || || || ||||| | ||| | || || | || Sbjct 12152447 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCA 12152389 Query 159290 AGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGG 159349 |||||| || ||||||| | | ||||| || |||||||||||||| | ||| | || || Sbjct 12152388 AGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGG 12152329 Query 159350 TGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGG 159409 | || || |||| ||||||||||| | || || |||||||| |||| || ||||| Sbjct 12152328 CGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGG 12152269 Query 159410 AGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTAT 159469 || ||||| || || || ||| | ||||||||| || || |||||||| || Sbjct 12152268 TGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 12152209 Query 159470 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTG 159529 |||||| || |||||||| ||||| | |||| || |||| ||||| || || || || Sbjct 12152208 GGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTG 12152149 Query 159530 GCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCAT 159589 | | ||||||| |||||| ||||| | || | ||| |||||| | |||| | Sbjct 12152148 GTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGT 12152089 Query 159590 TATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGC 159649 | || || ||| | || || |||| || || ||||| || || | | | ||||| Sbjct 12152088 AGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGC 12152029 Query 159650 AGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACG 159709 |||||| | ||||||| || ||| | || || || |||||| | || ||||| | || Sbjct 12152028 GGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCG 12151969 Query 159710 TGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCT 159769 ||||||| |||| || ||| | || ||||||||| | || |||| || || ||||| Sbjct 12151968 TGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCT 12151909 Query 159770 ACCAAGAGGTAACGC 159784 |||| | || ||||| Sbjct 12151908 ACCACGTGGAAACGC 12151894 >seq7 Length=29178675 Score = 192 bits (212), Expect = 6e-44 Identities = 204/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 159288 CAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTA 159347 |||||||| || ||||||||| ||||| || |||||||||||||| || ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 159348 GGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGAT 159407 || | || || |||| ||||||||||| | || || |||||||| |||| || ||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 159408 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCT 159467 || || ||||| || || || ||| | ||||||||| || || |||||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 159468 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGG 159527 |||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 159528 TGGCTTCATTTCTTTATGTTGTTTGTGCC 159556 ||| | |||||||||||||| ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 158222 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGT 158281 ||| | || |||||||| |||||||||||| | ||| | |||||||| ||||||||| Sbjct 3660660 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 3660601 Query 158282 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158341 | || || |||||||||||| || |||||| |||||||||| ||| ||| Sbjct 3660600 TCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGT 3660541 Query 158342 TTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158401 ||||| || ||||| || || || | |||||||||||| || |||| || ||||| || Sbjct 3660540 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 3660481 Query 158402 TCTGAT 158407 |||||| Sbjct 3660480 TCTGAT 3660475 >seq6 Length=37079636 Score = 114 bits (126), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 157075 AACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCA 157134 || || ||| | || |||| ||||| ||||| | |||||||| || || | | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 157135 ACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGC 157194 ||| | || | | | |||||| | || | ||||| || ||||| || |||||||| Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 157195 GAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCT 157254 ||| | ||| |||| ||||| | ||||| ||||| || || || ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 157255 TCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCA 157299 ||||| || || | | | || || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545084315085680