Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3 443 2e-119 seq20831 428 5e-115 seq7 188 9e-43 >seq3 Length=27950219 Score = 443 bits (490), Expect = 2e-119 Identities = 703/1004 (70%), Gaps = 3/1004 (0%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | || | ||||||| ||||| ||||||||||| || | || Sbjct 12152892 TGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12152833 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| | || | || | |||| | || || || | ||||| || | Sbjct 12152832 TTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTTGTAACTTCAT 12152773 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 179128 |||| || ||||| | |||||||||||| | |||||| || ||| || || || Sbjct 12152772 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCA 12152713 Query 179129 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179188 | ||||| |||||| || | | | |||||| | | |||| ||||||| ||| | | Sbjct 12152712 TTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCAC 12152653 Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 | | |||| || ||||| ||| | || || || | | ||| || |||||| ||| Sbjct 12152652 AAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACG 12152593 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307 | || || || |||| | || ||| | ||||| |||||||| || || || || | Sbjct 12152592 GCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 12152533 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 | || ||||| ||||| || || || ||||||| || || || || ||| ||| | Sbjct 12152532 -TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTC 12152474 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCG 179427 || || || ||||| || ||||| |||||||||||||||| |||||||| ||||| Sbjct 12152473 CTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 12152414 Query 179428 ATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCAC 179487 || ||| ||||| | ||||| || ||||| || || || |||| | | ||||| ||||| Sbjct 12152413 ATATTTCGATTCATCCTTTT-TTCCAAGGGTTTCATAATTGGATATTGAACCCATTTCAT 12152355 Query 179488 ATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACT 179547 ||||||||||| | ||| | || || | |||||||| | ||||||||||| | ||| Sbjct 12152354 ATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACT 12152295 Query 179548 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCT 179607 ||||| ||||| || | ||||||||| || ||||| ||||| || || || | Sbjct 12152294 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 12152235 Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| ||||| || || ||||| |||||||| | |||| Sbjct 12152234 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTT 12152175 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 |||||| | ||| |||||| |||||||| || |||| || | | ||||| | || | Sbjct 12152174 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGTATCGGTAACT 12152115 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | || |||| | | || |||||| | || || |||| ||||| Sbjct 12152114 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGAC 12152055 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || || || || | | | ||||| |||||| | | || ||||| ||| |||| || Sbjct 12152054 TTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAA 12151995 Query 179848 AACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAA 179907 || |||||| | || ||||| | ||||||||| |||| || ||| | || |||||| Sbjct 12151994 AATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAA 12151935 Query 179908 AACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| | || |||| || || || ||||| |||| ||||| || Sbjct 12151934 AACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq20831 Length=3535 Score = 428 bits (474), Expect = 5e-115 Identities = 541/741 (73%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 177600 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 177659 || ||||| || || ||||||| || || | ||| | |||||| | || || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 177660 GCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 177719 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 177720 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 177779 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 177780 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 177839 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 177840 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 177899 |||| |||| | || | ||||| | | || | | |||||||| |||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 177900 TGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCT 177959 ||||||||| | |||||| |||||||| || ||||| ||||||||| || || ||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 177960 GTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGA 178018 |||||||| ||| | || || ||||| | | || || | |||||||| || || || Sbjct 382 GTTGCAGCTGCAACTGCTGT-TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGA 324 Query 178019 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 178078 || ||||||||| || |||||||||||||| |||| ||| |||||||||| || || || Sbjct 323 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 264 Query 178079 CAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 178138 ||| || ||||||||||| || |||||| | ||||| ||||| |||||||| || || | Sbjct 263 CAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTT 204 Query 178139 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAAC 178198 || |||||||||||| | || |||||| | || | || || ||||||| Sbjct 203 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 144 Query 178199 TGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGC 178258 ||| || || | ||||||| |||||||||||||||||||| || ||||| || || Sbjct 143 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 84 Query 178259 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTC 178318 || |||||||| || || || ||||||||||||||||| |||||||| || ||||| Sbjct 83 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 24 Query 178319 ACTGCACTTCTTCCTCGCAGC 178339 | || |||||| | || || Sbjct 23 TTTACATTTCTTCTTAGCGGC 3 >seq7 Length=29178675 Score = 188 bits (208), Expect = 9e-43 Identities = 205/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 179449 TTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATC 179508 || ||||| || || || |||||| ||||| ||||| ||||||||||| || ||| | Sbjct 25949509 TTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 25949450 Query 179509 CTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAA 179568 ||||| | |||||||| | ||||||||||| | |||||||| ||||| || | |||| Sbjct 25949449 CTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 25949390 Query 179569 GATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTAT 179628 ||||| || ||||| ||||| || || || | || |||| || || || ||| Sbjct 25949389 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 25949330 Query 179629 TCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAG 179688 || ||||| || || ||||| |||||||| || ||||| |||||| | ||| |||||| Sbjct 25949329 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 25949270 Query 179689 CGTTGGTTCCACTTCTTTAAGCTGTTTGTTCC 179720 |||||||| || ||||||| | | ||||| || Sbjct 25949269 CGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605456950202360