Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 125 7e-24 seq7 100 3e-16 seq3 98.7 1e-15 seq8 87.8 2e-12 >seq6 Length=37079636 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || ||| ||| ||| | ||||| ||||| || || Sbjct 19969563 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCA-TCCTCAAGCTGTTTACC 19969621 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| ||||||||||| |||||| ||| Sbjct 19969622 AGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTT 19969681 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | ||||| ||| || || || ||||| Sbjct 19969682 GACATTGTCAATTGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGT 19969741 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 19969742 CTTCACGAAAATCTGCAT 19969759 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | | || ||| | ||||| || Sbjct 19969782 AAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCA-TCCTCAAG 19969840 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || ||||||| ||||||||||| |||||||| ||||| ||||| ||| Sbjct 19969841 CTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTGTCCTGGAT 19969900 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | ||| || |||| ||| | ||| || || Sbjct 19969901 CTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATGGTCTTACC 19969960 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 19969961 AGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 122 bits (134), Expect = 8e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||||| ||||| |||||||| || ||| || ||| | ||||| ||||| Sbjct 13448117 TGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCCAAAGTCCGACCA-TCCTCAAGCTG 13448059 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | ||||| ||||||||||| || ||||| || |||||||| |||||| Sbjct 13448058 CTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 13447999 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | |||| ||||| | | |||||| || | |||| || || ||||| Sbjct 13447998 AGCCTTCACATTGTCAATTGTGTCTGAGCTCTCCACCTCAAGAGTGATTGTCTTCCCGGT 13447939 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||||||||||||| Sbjct 13447938 CAAGGTCTTAACGAAAATCTGCAT 13447915 Score = 122 bits (134), Expect = 8e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 || || | ||| ||||||||||| || |||||||| ||| ||| |||| ||||| | Sbjct 13448348 AAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCA--GTGTACGACCATCCTCAA 13448291 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || ||||||||||| || || || |||||||| || || Sbjct 13448290 GCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGGA 13448231 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | |||| || || | | ||| || || | |||| || |||| Sbjct 13448230 TCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACTTCAAGTGTGATTGTCTTGC 13448171 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || |||||||||||||| Sbjct 13448170 CGGTAAGAGTCTTCACGAAAATCTGCAT 13448143 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||||||||| |||||||| ||| ||| || ||||||||| Sbjct 19970010 AAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCCAGAGTTCTGCCGTCCTCGAGT 19970069 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | | |||||||| ||||| || || || ||||| ||| Sbjct 19970070 TGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATT 19970129 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||||| | || || || | ||||| ||| || ||| Sbjct 19970130 TTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGATGGTCTTACCG 19970189 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 19970190 GTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || |||||||| | | || ||| | |||||||| Sbjct 33565061 AAGTGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTTCGACCA-TCCTCGAG 33565003 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || |||| ||||||||| |||||||| ||||||||||| ||| Sbjct 33565002 CTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC-TTGAA 33564944 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | | |||| ||||| | | ||| || || | ||| | ||||| | Sbjct 33564943 TTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACTTCTAGGGTAATCGTTTTAC 33564884 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || |||| ||| Sbjct 33564883 CAGTAAGTGTCTTGACAAATATCTACAT 33564856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || || ||||| || || ||||| | | ||| ||| | ||||| || Sbjct 33565289 AAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCAAGCGTTCGACCA-TCCTCAAG 33565231 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | ||||| | ||| ||||| |||||||| ||||||||||| || Sbjct 33565230 TTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGAAT 33565171 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | ||| || || | ||| | ||||| || Sbjct 33565170 CTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACC 33565111 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| Sbjct 33565110 AGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||||||||| ||| || | | | || || | |||||| || Sbjct 19970475 GTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGGCCA-TCTTCCAACTGCTTTCC 19970533 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | | |||||| || ||||| || || ||||| || |||||| ||| Sbjct 19970534 AGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTTATCTTGGATCTTAGCCTT 19970593 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| | ||||| |||| ||||| || || ||||| ||||| Sbjct 19970594 AACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAGTCTTTCCGGTGAGAGT 19970653 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 19970654 TTTCACAAAGATCTGCAT 19970671 >seq7 Length=29178675 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||||||||| || | || ||| | |||||||| Sbjct 2571047 AAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCAAGGGTTCGACCA-TCCTCGAG 2570989 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | ||||||| ||| | ||| |||||||| |||||||| || ||| Sbjct 2570988 CTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGGATCCCTTCCTTATCTTGGAT 2570929 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| |||| | | ||| || || | ||| | ||||| || Sbjct 2570928 CTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACTTCTAAGGTAATAGTTTTACC 2570869 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| Sbjct 2570868 AGTGAGTGTTTTCACAAATATTTGCAT 2570842 >seq3 Length=27950219 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| || || || |||||||| ||| || ||| |||||||||||| || | Sbjct 5226852 GTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGT--ACGGCCGTCCTCGAGCTGTTTAC 5226909 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| || ||||| |||||||| ||||| ||||| |||||| | Sbjct 5226910 CGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCAT 5226969 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || || ||||||| | || || || | || | ||| ||||| || |||| Sbjct 5226970 TGACGTTTTCGACGGTGTCGGAGCTTTCGACCTCAAGTGTTATGGTCTTGCCCGTAAGAG 5227029 Query 133642 TTTTTACGAAAATCTGCATGGC 133663 |||| ||||| || ||||| || Sbjct 5227030 TTTTCACGAAGATTTGCATCGC 5227051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || ||| | ||||| | ||||| ||| || ||||| | ||||||| Sbjct 16879309 TCTTCAAGCTGCTTACCGGCGAATATGAGTCTCTGCTCGTCCGGTGGGATTCATTCCTTG 16879250 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| |||||| | || || |||| ||| | | Sbjct 16879249 TCCTGGATCTTAGCCTTGACGTTGTCAATAGTGTCGAAGCTTTCAACTTCGAGGGTAATG 16879190 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||| ||| || || ||||||||||| Sbjct 16879189 GTCTTGCCTATCAAAGTCTTCACAAAAATCTGCAT 16879155 >seq8 Length=40886855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| |||||||| ||| | | || || || || Sbjct 1190078 AAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGTCCTTCCATCTTCAAGT 1190137 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || | ||||| || ||||| || ||||||||||| |||| Sbjct 1190138 TGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATC 1190197 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | ||||| | | ||| || |||| || | ||| || || Sbjct 1190198 TTTGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCA 1190257 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| || ||||| Sbjct 1190258 GTAAGAGTTTTCACGAATATTTGCAT 1190283 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || | || |||| |||||| || || ||||| ||||||||| Sbjct 1189673 TCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCTTCCTTG 1189732 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | |||| ||||| | | |||||| || | |||| Sbjct 1189733 TCCTGAATCTTAGCCTTGACGTTATCAATAGTGTCTGAGCTCTCCACCTCCAAAGTGATA 1189792 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || || || |||||||| Sbjct 1189793 GTCTTACCAGTAAGGGTCTTCACAAAGATCTGCAT 1189827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483252986512040