Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 120 7e-22 >seq5 Length=22804910 Score = 120 bits (132), Expect = 7e-22 Identities = 217/314 (69%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 ||||| || ||||||||||||||||||||||| || ||| | |||||| | || || ||| Sbjct 2412456 GTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTTCTGTTCGATTTTCTGG 2412397 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 |||||||| |||||| | |||||||| | | || || || |||| ||||| ||||| Sbjct 2412396 CTTAAGAAACGTGGACTCATGCCTGGTTTAACTTTCTCTAACGAATTAATCTCAAGAGAC 2412337 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT 132043 |||| || || ||| || ||| || || || | || | || ||| | Sbjct 2412336 GAAGGTTTACACTGTGATTTCGCTTGTTTGATTTACACTCTGTTACGTACCAAGCTTAGT 2412277 Query 132044 GAAAATAATATTAAA--CAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTA 132101 || | || | | || | | || | |||| || ||||| || |||| |||||| | Sbjct 2412276 GAGGA-AAGAGTGAAGTCTA-TTGTTTGCGATGCGGTTGAGATTGAGAGAGAGTTTGTAT 2412219 Query 132102 CAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTG 132161 ||||| | ||||| ||| |||| ||||||| ||| | |||| |||| |||| Sbjct 2412218 GTGAAGCGCTTCCTTGTGCGTTGGTTGGTATGAATGGTGAATTGATGAGTCAGTATATTG 2412159 Query 132162 AATTCGTTGCTGAT 132175 | || ||||| ||| Sbjct 2412158 AGTTTGTTGCGGAT 2412145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186390513090931