Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq20831 443 6e-120 seq6 91.5 4e-14 >seq20831 Length=3535 Score = 443 bits (490), Expect = 6e-120 Identities = 560/760 (74%), Gaps = 10/760 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 699 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| ||||||||||| ||||| ||||| || |||||||| || || || Sbjct 698 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 639 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || |||||||| |||||||| || || || || ||| | |||| | Sbjct 638 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 579 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 578 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 521 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| |||||||| || || | |||| | || | ||||| | |||| | | Sbjct 520 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 461 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 460 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 401 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | | ||||| |||| Sbjct 400 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATTTACCCAATTGG 342 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 341 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 282 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| |||||||| || |||||| | ||||| ||||| Sbjct 281 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 222 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || |||| ||||| ||||| ||||| |||| || | || | ||| Sbjct 221 TGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 163 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || |||||||||| Sbjct 162 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAG 103 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || || ||||| ||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 102 AAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 43 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286 |||||||||| |||||| |||| |||||| | || || Sbjct 42 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq6 Length=37079636 Score = 91.5 bits (100), Expect = 4e-14 Identities = 160/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 19529 AACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCC 19588 || || |||||||| |||| |||||||| |||||||||| | || ||| | Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGC 27053840 Query 19589 ACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCG 19647 | | || | || | ||| ||||||||||| |||| ||||| || |||||||| || || Sbjct 27053839 AACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 27053780 Query 19648 CGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 19707 ||| | || || || ||||||||||||||||| || || || || ||| | |||| Sbjct 27053779 TGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC 27053720 Query 19708 GA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 19752 | ||||| || || | | || || ||||| || |||||||| Sbjct 27053719 TACTTCAGCA--GCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148779719145318