Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq20831 416 8e-112 seq6 93.3 1e-14 >seq20831 Length=3535 Score = 416 bits (460), Expect = 8e-112 Identities = 552/759 (73%), Gaps = 8/759 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || |||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 699 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 698 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 639 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 638 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 579 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 578 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 521 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 520 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 461 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 460 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 401 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| ||| |||| |||||| | | |||||| | ||| Sbjct 400 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGT 341 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 340 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 281 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 280 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 221 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-T 29255 || ||||| ||||| |||||||||| ||||| ||||| |||| | | || | ||| | Sbjct 220 GTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGAT 162 Query 29256 GCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | || || || ||| | ||| || | ||||||| || |||||||||||||| Sbjct 161 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGA 102 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 101 AACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 42 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 |||||| ||| |||||| |||| |||||| | || || Sbjct 41 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 28657 AACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCC 28716 || || |||||||| |||| |||||||| |||||||||| | || ||| | Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGC 27053840 Query 28717 ACCATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCG 28775 | | || | || | ||| ||||||||||| | || ||||| || |||||||| || || Sbjct 27053839 AACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 27053780 Query 28776 CGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACC 28835 ||| |||| ||||| |||||| ||||||||||| || || || || ||| | | || Sbjct 27053779 TGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC 27053720 Query 28836 GA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAA 28883 | ||||| || || | | || || ||||| || |||||||| || Sbjct 27053719 TACTTCAGCA--GCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCAAA 27053673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146617232526766