Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq20831 473 3e-129 seq6 100 8e-17 >seq20831 Length=3535 Score = 473 bits (524), Expect = 3e-129 Identities = 582/788 (74%), Gaps = 8/788 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || || |||||||| || || |||||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | || ||| | || ||| ||| ||||| || ||||||||||| || Sbjct 724 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||||||||| |||||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | ||| || || || | || || ||||| Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 548 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || ||||||||| || ||||||||||||| |||||||| || || | |||| | Sbjct 547 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 488 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 487 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 428 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 427 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 368 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | | || ||| |||||||||| ||| || | ||||||| | || Sbjct 367 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 308 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| ||| |||||||||||||||| || ||||| || |||||| Sbjct 307 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 248 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | ||||| |||||||| |||||||| || |||||||||| ||||| Sbjct 247 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCAT 188 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 187 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 129 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || || ||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 128 AGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 69 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | || ||||| || || ||||||||| |||||| |||||||||| || Sbjct 68 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 9 Query 19500 GGCTGCTT 19507 || |||| Sbjct 8 AGCGGCTT 1 >seq6 Length=37079636 Score = 100 bits (110), Expect = 8e-17 Identities = 162/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 18751 AACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTAC 18809 || |||||||| || || |||||||| |||||||||| | || ||| | || || Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAAC 27053837 Query 18810 TATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGA 18869 | ||| | ||| || ||||||||| | ||||| ||||| |||||||| || || || Sbjct 27053836 TTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGA 27053777 Query 18870 GCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA- 18928 ||||| | || |||||||||||||||||| || || || || ||| | |||| | Sbjct 27053776 ATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 27053717 Query 18929 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAA 18974 ||||| || || | | || || ||||| || |||||||| || Sbjct 27053716 TTCAGCA--GCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCAAA 27053673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141102251860518