Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq1 95.1 1e-14 seq6 93.3 4e-14 seq3 93.3 4e-14 >seq4 Length=23266485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTT 131972 |||||| || | | |||| || || || ||||||||||| | || | |||| ||||| Sbjct 5744556 AACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTC-CGCAAGAGTACAACCATCTT 5744498 Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGG 132032 ||||||||||||| | | ||||||| | ||||| || ||||| || ||||||||||| Sbjct 5744497 CGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGGATTCCTTCTTTATCTT 5744438 Query 132033 TAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 ||| || || | | || | ||||| | ||| ||||| | || | ||| Sbjct 5744437 GAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAACTTCTAGGGTAATGATTT 5744378 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCATGAC 132126 ||||||| || ||||| | || || ||||| || Sbjct 5744377 TACCAGTGAGTGTTTTCACAAAGATTTGCATCAC 5744344 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| | || || ||| || || ||||| ||| Sbjct 5738658 TTGACTCTTTCTGAATGTTGTAGTCCGCT-AAAGTCCGACCATCCTCTAGTTGTTTTCCG 5738600 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | ||||||| | |||||| || |||| || ||||| || || ||| || || Sbjct 5738599 GTAAAGATTAGCCTCTGTTGGTCCAGAGGGATTCCTTCCTTGTCTTGAATCTTCGCCTTG 5738540 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||| || | ||| ||||| | || | ||||||||||| || || Sbjct 5738539 ATGTTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTAAGCGTC 5738480 Query 132107 TTTATGAAAATCTGCAT 132123 || | || |||||||| Sbjct 5738479 TTGACAAATATCTGCAT 5738463 >seq1 Length=25238555 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAAT 131969 |||||||||||| | | |||||||| ||||||||||||| |||| | ||||| || Sbjct 21980186 CAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCCGCT-AGTGTACGACCAT 21980244 Query 131970 CTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTAT 132029 |||| || |||||||| | | |||| | | |||||||||||| ||||| || ||||| | Sbjct 21980245 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGTATTCCCTCTTTGT 21980304 Query 132030 C 132030 | Sbjct 21980305 C 21980305 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | |||||||| ||||||||||| || || ||||| ||| || Sbjct 13448351 ACCAAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCCTCA 13448292 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | ||||||||||||| || || || || || ||||| ||||| Sbjct 13448291 AGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGG 13448232 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | |||||| | ||| ||||| | || | || || Sbjct 13448231 ATCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACTTCAAGTGTGATTGTCTTG 13448172 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | |||||||||||| Sbjct 13448171 CCGGTAAGAGTCTTCACGAAAATCTGCAT 13448143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| || || || ||||||||| ||||| || Sbjct 33565507 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCTTCGAGTTGTTTTCCC 33565449 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | ||||||| | ||| || || ||||| || ||||| ||||| ||| || |||| Sbjct 33565448 GCAAAGATTAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCTTGAATCTTCGCTTTC 33565389 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | ||||| | || || || | || | ||| || || |||| ||| Sbjct 33565388 ACATTGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTTATCGTCTTTCCCGTCAAAGTC 33565329 Query 132107 TTTATGAAAATCTGCAT 132123 || | || |||||||| Sbjct 33565328 TTGACAAATATCTGCAT 33565312 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || ||||||||||||||| | ||| || | Sbjct 19969773 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCA 19969832 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | | || |||||||| || || ||||| || |||||||| Sbjct 19969833 TCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTG 19969892 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | ||| || | ||| || |||| || | Sbjct 19969893 TCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATG 19969952 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| || || | ||| |||||||| Sbjct 19969953 GTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| || || || ||||||||| ||||| || Sbjct 33830076 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCTTCGAGTTGTTTTCCC 33830134 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | | ||||||| | ||| || || ||||| || ||||| ||||| Sbjct 33830135 GCAAAGATTAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATC 33830178 >seq3 Length=27950219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||| || | ||||||| ||||| |||||||| || || |||||| Sbjct 5226830 CAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACG 5226889 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || |||||||||||||||| | |||| || | ||||| || ||||| || ||||| Sbjct 5226890 GCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTC 5226949 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || || | | ||| || || |||| || || || | || Sbjct 5226950 TTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACCTCAAGTGT 5227009 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || |||||||| | ||| || ||||| Sbjct 5227010 TATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGAATCTTCGAGCTGTTTACCG 131986 |||||||||| ||||||||||||| |||| || || || ||||||||| ||||| || Sbjct 14806383 TTGACTCTTTCTGAATGTTGTAGTCCGCTAAT-GTCCGACCATCTTCGAGTTGTTTTCCC 14806325 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 | | ||||||| | ||| || || ||||| || ||||| ||||| Sbjct 14806324 GCAAAGATTAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATC 14806281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476445750379560