Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq8 89.7 5e-13 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| || | ||||| | ||||| ||| | | Sbjct 19970215 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAAGTTGAAAGCTCC 19970156 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||||| || ||||||||||| || || || ||| Sbjct 19970155 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 19970096 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || ||| || |||||||| || | |||| | | ||| |||||| Sbjct 19970095 CAAAGATTGATTTTCGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 19970036 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| || || | ||||| ||||| Sbjct 19970035 ATCCAGAAAGAGTCTACTCTCCATTTGGTGTT 19970004 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAACGATACTAT 25242 ||||| || ||| | || || ||| |||| || | |||||||| ||| | || || || Sbjct 33564865 TTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCA-GACACCAT 33564923 Query 25243 CGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302 || | || ||| |||||| || || || || || || || || ||||| || || Sbjct 33564924 TGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGAGGCT 33564983 Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAA 25362 || | | ||| || || ||||| |||| | ||| | | |||||||| || || || Sbjct 33564984 GATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAACATCCAGAA 33565043 Query 25363 AGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||| | || || || | || ||||||||||| Sbjct 33565044 GGAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGG 33565082 >seq8 Length=40886855 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || ||||| | || || |||| ||||| | Sbjct 1190283 ATGCAAATATTCGTGAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1190224 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || ||| || || || || ||||| || || |||||| Sbjct 1190223 GACACTATCGATAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1190164 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || || || ||||| ||||||| || | | | ||| |||||| Sbjct 1190163 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCCGACTACAAT 1190104 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || || ||| | || || || | |||||||||| || Sbjct 1190103 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1190057 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || |||||||| | || || | || || ||| | | Sbjct 1190055 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAGGTTGAAAGCTCC 1189996 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || || || || |||||||| || || || |||||| Sbjct 1189995 GATACTATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 1189936 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || || || || || ||||||| || | | | |||||||| Sbjct 1189935 CAAAGACTTATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1189876 Query 25355 ATTCAAAAAGAATCCAC 25371 || || ||||| ||||| Sbjct 1189875 ATCCAGAAAGAGTCCAC 1189859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444939891042720