Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 9e-16
seq8 89.7 5e-13
>seq6
Length=37079636
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || ||||| || | ||||| | ||||| ||| | |
Sbjct 19970215 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAAGTTGAAAGCTCC 19970156
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || ||||| || ||||||||||| || || || |||
Sbjct 19970155 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 19970096
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | |||| || ||| || |||||||| || | |||| | | ||| ||||||
Sbjct 19970095 CAAAGATTGATTTTCGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 19970036
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|| || ||||| || || | ||||| |||||
Sbjct 19970035 ATCCAGAAAGAGTCTACTCTCCATTTGGTGTT 19970004
Score = 82.4 bits (90), Expect = 7e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAACGATACTAT 25242
||||| || ||| | || || ||| |||| || | |||||||| ||| | || || ||
Sbjct 33564865 TTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCA-GACACCAT 33564923
Query 25243 CGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302
|| | || ||| |||||| || || || || || || || || ||||| || ||
Sbjct 33564924 TGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGAGGCT 33564983
Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAA 25362
|| | | ||| || || ||||| |||| | ||| | | |||||||| || || ||
Sbjct 33564984 GATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAACATCCAGAA 33565043
Query 25363 AGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
||||| ||| | || || || | || |||||||||||
Sbjct 33565044 GGAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGG 33565082
>seq8
Length=40886855
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | || ||||| | || || |||| ||||| |
Sbjct 1190283 ATGCAAATATTCGTGAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1190224
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| |||||||| | || || ||| || || || || ||||| || || ||||||
Sbjct 1190223 GACACTATCGATAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1190164
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| || | || || || ||||| ||||||| || | | | ||| ||||||
Sbjct 1190163 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCCGACTACAAT 1190104
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || || || || ||| | || || || | |||||||||| ||
Sbjct 1190103 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1190057
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || || |||||||| | || || | || || ||| | |
Sbjct 1190055 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAGGTTGAAAGCTCC 1189996
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || || || || || |||||||| || || || ||||||
Sbjct 1189995 GATACTATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 1189936
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| || | || || || || || ||||||| || | | | ||||||||
Sbjct 1189935 CAAAGACTTATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1189876
Query 25355 ATTCAAAAAGAATCCAC 25371
|| || ||||| |||||
Sbjct 1189875 ATCCAGAAAGAGTCCAC 1189859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444939891042720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |