Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18845 154 2e-31 seq5 140 5e-27 >seq18845 Length=505 Score = 154 bits (170), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 214 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 267 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 268 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 327 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 328 CGTCTCGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 387 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| ||| ||| |||||| |||||| ||||| || ||||||| Sbjct 388 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGCTGTCTCTGAAGGCACCA 439 >seq5 Length=22804910 Score = 140 bits (154), Expect = 5e-27 Identities = 376/566 (66%), Gaps = 13/566 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 |||| || || | ||||| | ||| ||||||||||| ||| || ||||| || || || Sbjct 2412884 TGTTTCCAATTCACTACCCACAGATCTGGGAAATGTA-CAAGAAAGCCGAAGCATCATTC 2412826 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC-ACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| ||||| || || || ||| ||| || || |||||| || | ||| Sbjct 2412825 TGGACAGCCGAAGAAGTAGATCTCTCACAAGACAACCGT-GACTGGGAAAATCTCAACGA 2412767 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 || || || || |||||||| ||||| |||| |||| |||||||| || || |||| Sbjct 2412766 CGGAGAACGTCACTTCATCAAACACGTACTCG-CTTTCTTCGCCGCATCTGACGGAATCG 2412708 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| ||||| || || || ||| ||| || ||| | | || || ||| | Sbjct 2412707 TACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGAAGCGCGTGCAT 2412648 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || || || ||||| || || | || || || || ||| Sbjct 2412647 TCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCG 2412588 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 |||| ||| |||| || || | || || || || || || ||||| ||| | | Sbjct 2412587 ACACTTACATCAAAGATAACAAAGAAAGAGATCATCTATTCCGTGCAATCGAAACGATTC 2412528 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || | || || || ||||| |||| |||||| | || ||| | Sbjct 2412527 CTTGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATC-----GATGGATCTCAAAC 2412473 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 || || || || |||| | || || | || || || || || ||||| || || Sbjct 2412472 ATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTT 2412413 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AAC 1456289 ||| | || || ||||| ||||| || || |||||||| || || |||| | ||| Sbjct 2412412 CTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGG--TTTAACTTTCTCTAAC 2412355 Query 1456290 GAATTTATCAGTCGCGACGAAGTTTT 1456315 ||||| ||| | ||||||| ||| Sbjct 2412354 GAATTAATCTCAAGAGACGAAGGTTT 2412329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175132636006902