Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq3 515 5e-141 seq20831 428 5e-115 seq7 203 4e-47 seq6 114 1e-20 >seq3 Length=27950219 Score = 515 bits (570), Expect = 5e-141 Identities = 733/1026 (71%), Gaps = 9/1026 (1%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATC--GCTTTGTCTTTGTGGGTTGGTCTG 159436 |||||| | ||||||||||| | | ||| | ||||||| ||||| |||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTT--ACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTG 12152845 Query 159437 GACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTT 159496 | || | || |||| ||| ||| | || | || | |||| | || || | || | Sbjct 12152844 GTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCT 12152785 Query 159497 TTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTC 159556 || | || ||||| || || || | ||||||||||| | |||||| |||||| Sbjct 12152784 TTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTT 12152725 Query 159557 TCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 159616 || || || | || || |||||| || | | | |||||| | | |||| |||| Sbjct 12152724 AAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGG 12152665 Query 159617 GTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTG 159676 ||| ||| | ||| | || || || ||||| ||| | || || | | | | |||| Sbjct 12152664 GTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTG 12152605 Query 159677 TTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC 159736 |||||||| |||| || || || | ||| |||||||| |||| ||||||||| |||||| Sbjct 12152604 TTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTC 12152545 Query 159737 GTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 | ||| | || ||||| ||||| || || ||||||||||| || |||||||||| Sbjct 12152544 GATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTG 12152485 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | || |||| || |||||||||||||| ||| ||||||||||| |||||||| | Sbjct 12152484 TTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 12152425 Query 159857 GGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTC--AGGGTTTCCACAACTGGACCCT 159914 | ||||| || || ||| ||||| | | || ||| |||||||| | || |||| | Sbjct 12152424 GTGTAGCGGCTATATTTCGATTCATCCTTTT--TTCCAAGGGTTTC-ATAATTGGATATT 12152368 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| || |||||||||||||| | ||| |||| || | || ||| | || || || Sbjct 12152367 GAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTAT 12152308 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 ||||||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 12152307 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 12152248 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| || Sbjct 12152247 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 12152188 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154 ||| | |||| || ||||| ||||| || || || ||| | ||||| | ||||| || Sbjct 12152187 GTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATT 12152128 Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214 ||| | || | ||| |||||| || |||| | | || || ||||| ||||| Sbjct 12152127 TGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCT 12152068 Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 |||| || || ||||| ||||| | | ||||| |||||| | |||||||||| Sbjct 12152067 ATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGAC 12152008 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 ||| | || || || || || || || ||||| |||||||||||||||| || || Sbjct 12152007 TTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGA 12151948 Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACTGTG 160394 | | || ||||||||| |||| |||| |||||| || ||||| | || ||||| || | Sbjct 12151947 TAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 12151888 Query 160395 ATTAAA 160400 || ||| Sbjct 12151887 ATGAAA 12151882 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 160266 ATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGC 160325 || |||||| ||||| || || || || || || || ||||| |||||||||||||||| Sbjct 27467485 ATATGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGC 27467544 Query 160326 ACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAA 160385 || ||||| || ||||||||| |||| ||||||||||| || ||||| | || || Sbjct 27467545 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 27467604 Query 160386 CGCACT 160391 ||| || Sbjct 27467605 CGCTCT 27467610 >seq20831 Length=3535 Score = 428 bits (474), Expect = 5e-115 Identities = 567/784 (72%), Gaps = 2/784 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| | ||| ||||| || | || ||| | || |||| ||||| ||||| | Sbjct 785 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 726 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCC 157794 |||||| ||||| || | | |||||| | ||| || |||| ||| | |||||||| Sbjct 725 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || ||||| || || || ||||| ||| |||| || || | || || ||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || || ||||| || |||||| ||| || || ||| | || || ||||| || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 ||||||||| ||||| |||| || ||||| || ||||| ||||||| |||| | || Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | ||||| | | || | | |||||||| |||||||||||||| || ||| Sbjct 485 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 426 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 | | |||||||| || ||||| ||| |||||||| ||||| || || || || | ||| Sbjct 425 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 366 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 || ||| | | || || | |||||||| ||| || |||| ||||||||| || || Sbjct 365 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 306 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 305 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 246 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | ||||| ||||| |||||||| || || | || |||||||||||| Sbjct 245 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGG 186 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | || |||| || | | || | ||||| || |||| || || || | | Sbjct 185 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 127 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| | ||||| ||||||||||| || |||||||| || || || ||||| || || | Sbjct 126 GTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 67 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 | || |||||||||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 66 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 7 Query 158454 CTGC 158457 | || Sbjct 6 CGGC 3 >seq7 Length=29178675 Score = 203 bits (224), Expect = 4e-47 Identities = 213/278 (77%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 159885 GTTCCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 159942 |||| ||| |||||||| | || ||||| ||||| || |||||||||||||| || Sbjct 25949514 GTTCTTTCCAAGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCC 25949456 Query 159943 GGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTG 160002 ||| |||| || | || ||| | || || || ||||||||||||||||| || || || Sbjct 25949455 GGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 25949396 Query 160003 TTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAG 160062 ||||||||||| || ||||| ||||| || ||| | || ||||||| ||||| Sbjct 25949395 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 25949336 Query 160063 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCT 160122 |||||||| |||||||| || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 25949335 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCC 25949276 Query 160123 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 160160 || || || ||| | ||||| || ||||| ||||| || Sbjct 25949275 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 Score = 105 bits (116), Expect = 8e-18 Identities = 287/439 (65%), Gaps = 19/439 (4%) Strand=Plus/Plus Query 159964 TTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCA 160023 || ||||| | |||||||||| | | | || | | ||| | ||||| || ||| Sbjct 20870526 TTATGTGCTACTCATGGTGCTATTTAAAAAAATATTTAATTTAAGGATGGTGATGGTGCA 20870585 Query 160024 AACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCA 160083 || ||||| || ||| | | |||||| | | | ||||||| ||| ||| || Sbjct 20870586 AATACATTCCGTGCTTTTAACTCAACTCAAACTGGAAAAACTTATTGAATGCTCAACGCT 20870645 Query 160084 AACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTT 160143 |||||||| ||||| || || | || ||||| ||||| | || ||| | |||||| Sbjct 20870646 AACCGCTTTTGGTCACAAATATCTGGGGTTGCTTTTTCCGGTATACGTTGGTTACATTTT 20870705 Query 160144 TTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTT 160203 || || || ||| | | || || ||| ||| | || || | | | || || Sbjct 20870706 TT-ATTTTATTTCTACTAGTAATTGGTTTATAAATGAGTACTCTTAGAGTAGTCGGCCTA 20870764 Query 160204 GCTTTCAACCTTC------GTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAA 160257 ||||| ||||| | |||| || || ||||| || || || | ||||| ||| Sbjct 20870765 GCTTTGAACCTACTGGGCAGTGCCTATGACTTCGTTTC-CATGAATTTTGTGCAGCGGAA 20870823 Query 160258 GATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCT 160317 ||||| | ||||| | || || ||| | || || ||||| |||||||| Sbjct 20870824 GATCC-----------CTTTCTATAATAAAAATATCTTTTTAAACGAAGGCATTCGTGCT 20870872 Query 160318 TGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCT 160377 |||||||| || |||||||| |||| ||| |||| ||| ||||||||| |||| Sbjct 20870873 TGGATGGCGGCTCAAGATCAACCTTATGAGAACCTTATATTCTTTGAGGAAGTTCTACTA 20870932 Query 160378 AGAGGTAACGCACTGTGAT 160396 | || ||||| | |||| Sbjct 20870933 CGTGGAAACGCTTTTTGAT 20870951 >seq6 Length=37079636 Score = 114 bits (126), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 157700 AACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCA 157759 || || ||| | || |||| ||||| ||||| ||||||||||||| || | | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 157760 ACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGC 157819 ||| | ||| | |||| ||| | ||| |||| || || || ||||| || || || Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 157820 GAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCT 157879 ||| | ||| |||| || || | ||||| ||||| || || || ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 157880 AGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCA 157924 | |||| || || || | || || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572825081881200