Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq20831 401 7e-107 seq3 387 2e-102 seq7 174 2e-38 seq2 100 3e-16 >seq20831 Length=3535 Score = 401 bits (444), Expect = 7e-107 Identities = 535/741 (72%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 160002 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 160061 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 160062 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 160121 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 160122 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 160181 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 160182 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 160241 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 160242 CCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 160301 |||| |||| | || | ||||| | | || | | |||||||| |||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 160302 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 160361 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 160362 GTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGAT 160421 || || || ||| ||||||| ||| | | || || | |||||||| ||| || ||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 160422 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 160481 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 160482 AATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTG 160541 || || |||||||| || || |||||| | || || ||||| |||||||| || || || Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 160600 || ||||||||| || | || |||| || | | || | ||||| || |||| Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAA 144 Query 160601 AGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGC 160660 || || || | ||||| | ||||| ||||| ||||| || |||||||| || || Sbjct 143 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 84 Query 160661 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 160720 || |||||||| || || || ||||||||||||||||| |||||||| || ||||| Sbjct 83 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 24 Query 160721 ACTTCACTTCTTCCTGGCAGC 160741 | || |||||| | || || Sbjct 23 TTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 387 bits (428), Expect = 2e-102 Identities = 680/984 (69%), Gaps = 5/984 (1%) Strand=Plus/Minus Query 161724 TTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGC 161783 || |||||||| || |||||||| || | || |||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 161784 GGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCC 161843 | |||| | || || |||| || | ||| |||||||| ||||| | ||||||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 161844 TATCTTGAGGGTGCAAACTTTCTTACAGC-GTCAGTTAGCACTCCAGCTGACGCTATGGG 161902 ||| | || ||| || ||| || || | || || | ||||| ||| | | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCG-ACTCCTGCTAATAGTTTAGC 12152688 Query 161903 TCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCC 161961 |||||| || || || || ||||||| ||| || ||| | ||||| || ||| | Sbjct 12152687 ACATTCT-TTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 161962 AACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCA 162021 || | || || |||| | |||||| || ||| | || || || || |||| | || | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 162022 TGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGT 162081 || | ||||| |||||||| || || || | || || || ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 162082 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCA 162141 |||||||||| || ||||||||||| ||| |||| || || ||| ||||||| || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 162142 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC 162201 ||||||| || || || ||||| || || || || ||| ||||| | | ||| | | Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCC 12152390 Query 162202 AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 162261 |||| || ||||| |||| ||||||| || |||||||||||||| | ||| |||| | Sbjct 12152389 AAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCG 12152330 Query 162262 GTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATG 162321 | | || || |||| |||||||| || | || || |||||||| |||| || |||| Sbjct 12152329 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 12152270 Query 162322 GAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTA 162381 | || ||||| || || || ||| | | || || | ||||| |||||||| | Sbjct 12152269 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12152210 Query 162382 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 162441 ||||||| || |||||||| ||||| | |||| || |||| ||||| || || || | Sbjct 12152209 TGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTT 12152150 Query 162442 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCA 162501 || | ||||| | ||||| ||||| | || | ||| |||||| || |||| Sbjct 12152149 GGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAG 12152090 Query 162502 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 162561 | | || || ||| | ||||| |||| || || ||||| ||||| | | | |||| Sbjct 12152089 TAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAG 12152030 Query 162562 CAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTAC 162621 | |||||| | | ||||| || ||| | ||||| || ||||| | || ||||| | | Sbjct 12152029 CGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTC 12151970 Query 162622 GTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTC 162681 |||| ||| | || || || | || ||||| ||| |||| |||| || || |||| Sbjct 12151969 GTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTC 12151910 Query 162682 TTCCTAGAGGCAACGCCCTTTAAT 162705 | || | || ||||| ||||||| Sbjct 12151909 TACCACGTGGAAACGCTCTTTAAT 12151886 >seq7 Length=29178675 Score = 174 bits (192), Expect = 2e-38 Identities = 209/283 (74%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 162189 CTGTTGTTTCTT--CAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAG 162246 || ||| ||||| ||||| || ||||| ||||| |||||| || ||||||||||||| Sbjct 25949520 CTCTTGGTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAG 25949461 Query 162247 TTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATA 162306 | || ||| |||| || | || || |||| |||||||| || | || || ||||||| Sbjct 25949460 TCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATA 25949401 Query 162307 CATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGG 162366 | |||| || ||||| || ||||| || || || ||| | | || || | | Sbjct 25949400 CTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTG 25949341 Query 162367 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGT 162426 |||| |||||||| |||||||| || |||||||| ||||| || ||||| || |||| | Sbjct 25949340 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTT 25949281 Query 162427 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 162469 |||| || || || ||| | ||||| || ||||| ||||| || Sbjct 25949280 TTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 161135 GATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCT 161194 || ||||| ||||| |||||| | ||| | || ||||| ||||||||| | || || Sbjct 3660651 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGTTCA 3660592 Query 161195 TCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGAT 161254 ||||||||||||| ||| || || | || || || ||||||||| ||| | ||| Sbjct 3660591 AGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCCTCGAT 3660532 Query 161255 GATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||||| ||||||| ||||| || | || |||| ||| |||||||| Sbjct 3660531 GATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 3660482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559309775180200