Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq20831 437 1e-117 seq3 394 1e-104 seq7 197 2e-45 seq2 104 3e-17 >seq20831 Length=3535 Score = 437 bits (484), Expect = 1e-117 Identities = 541/740 (73%), Gaps = 0/740 (0%) Strand=Plus/Minus Query 181023 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 181082 || ||||| || || ||||||| || || | ||| | |||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 181083 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 181142 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 181143 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 181202 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 181203 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 181262 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 181263 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAA 181322 |||| |||| | || | ||||| | | || | | || ||||| ||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 181323 TGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCA 181382 |||||||| || ||| | |||||||| || ||||| ||||||||| || ||||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 181383 GTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 181442 || ||||| ||| ||||||| ||| | | || || | |||||||| ||| ||||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 181443 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCAC 181502 | ||||| || || ||||||||||| ||||||| ||| |||| ||||| || |||||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 181503 AACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTG 181562 |||||||| ||||| || || |||||||| ||||| || |||||||| || || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 181563 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACT 181622 || ||||| ||||| ||||| ||||| || ||| | || | || || || |||| | Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 143 Query 181623 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCC 181682 || || || | ||||||| ||||||||||||||||| || |||||||| || || Sbjct 142 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 83 Query 181683 GCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 181742 || || ||||| ||||| || |||||||||||||||||| |||||||| || ||||| Sbjct 82 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 23 Query 181743 CTGCACTTCTTCCTCGCAGC 181762 | || |||||| | || || Sbjct 22 TTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 394 bits (436), Expect = 1e-104 Identities = 678/981 (69%), Gaps = 5/981 (1%) Strand=Plus/Minus Query 182395 GCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTG 182454 ||||||| ||||| ||||||||||| || | || |||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 182455 GCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTT 182514 | | |||| | || || || | ||||| || ||||| || || || | ||| || Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749 Query 182515 CCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGG 182574 ||||| | |||||| || ||| || || || | ||||| |||||| || | | | Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689 Query 182575 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCC 182634 |||||| | | |||| ||||||| ||| | || | |||| || ||||| | Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 182635 AACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCA 182694 || | || || |||| | ||| || |||||| |||| || || || | || |||| | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 182695 TGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCTTACAATGCGATTGCTT 182754 || | | ||||||||||||||||| || | | | ||||| ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 182755 TTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCT 182814 | |||||||| || ||||| || || ||| |||| || ||||| |||| || || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 182815 CTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTC 182874 |||||| || ||||| |||||||| ||||| || || | ||| | | || ||| Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTT--TTC 12152391 Query 182875 --AGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 182932 |||||||| | || |||| | | ||||| || |||||||||||||| | ||| |||| Sbjct 12152390 CAAGGGTTTC-ATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACT 12152332 Query 182933 GGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGA 182992 || | || ||||| | ||||| ||||||| || ||||| ||||| || | |||||| Sbjct 12152331 CGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 12152272 Query 182993 TGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTC 183052 ||| || ||||| ||||| || || | | ||||| | || || || ||||| Sbjct 12152271 TGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 12152212 Query 183053 GATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCG 183112 ||||| || || || || ||||||||| || |||| |||||||| ||| |||||| || Sbjct 12152211 AATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACG 12152152 Query 183113 TTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGG 183172 |||||| || |||| |||||| ||||| | || | ||| | ||| | | || |||| Sbjct 12152151 TTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGG 12152092 Query 183173 GATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGC 183232 | | || || ||| | || || |||| ||||| || || || || | | || Sbjct 12152091 AGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGC 12152032 Query 183233 AGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACT 183292 ||| |||||| | | || ||||| ||| | || || || || ||| | || ||||| | Sbjct 12152031 AGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTAT 12151972 Query 183293 ACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGT 183352 ||||||||| |||| || ||| | || ||||||||| | || |||| ||| || || Sbjct 12151971 TCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGT 12151912 Query 183353 TCTACCTAGAGGTAACGCACT 183373 |||||| | || ||||| || Sbjct 12151911 TCTACCACGTGGAAACGCTCT 12151891 >seq7 Length=29178675 Score = 197 bits (218), Expect = 2e-45 Identities = 212/278 (76%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 182867 GTTCCTTC--AGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCT 182924 |||| ||| |||||||| | || |||||| ||||| || |||||||||||||| || Sbjct 25949514 GTTCTTTCCAAGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCC 25949456 Query 182925 GGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTG 182984 ||| ||||||| | || ||||| | ||||| ||||||| || ||||| ||||| || Sbjct 25949455 GGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 25949396 Query 182985 TATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAG 183044 | ||||||||| || ||||| ||||| || || | | ||||| | || || Sbjct 25949395 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 25949336 Query 183045 ACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183104 || ||||| ||||| || || || || ||||||||||||||||| |||||||| ||| | Sbjct 25949335 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCC 25949276 Query 183105 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCC 183142 ||||| |||||||| || ||||||||||| ||||| || Sbjct 25949275 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 179483 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 179542 |||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||| | | Sbjct 3660656 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCAT 3660597 Query 179543 GTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTT 179602 ||||| ||||| |||||| | || |||||||||||||||| || || || Sbjct 3660596 GTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCC 3660537 Query 179603 TGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTAC 179657 | ||||| || || || | |||||| |||| ||||| | |||||||||| Sbjct 3660536 TCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 3660482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614404243182880