Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq20831 414 1e-110 seq3 370 2e-97 seq7 179 5e-40 seq6 141 1e-28 >seq20831 Length=3535 Score = 414 bits (458), Expect = 1e-110 Identities = 547/756 (72%), Gaps = 2/756 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||||||||||| | || ||||| |||||| | ||||| ||||| || || |||||||| Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 698 Query 174555 GTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAA 174614 ||| |||||||| ||| | | |||||| ||||| || || || || || |||||| Sbjct 697 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 638 Query 174615 CCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGT 174674 || || |||| || || | || |||||||| || || || ||||| || |||||| | Sbjct 637 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 578 Query 174675 TCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGG 174734 || || || ||| | || || ||||| ||||||||||| || | | || |||||| Sbjct 577 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 518 Query 174735 CTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCC 174794 || |||||||| ||||||| ||||| |||| | ||||| | ||||| | Sbjct 517 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 458 Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 457 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 398 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| || | || || ||| | | || || | |||||| Sbjct 397 GCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAA 338 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 337 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTA 278 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| || || || ||||| | |||||||| || |||||||| || || || ||||| Sbjct 277 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 218 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCG 175093 ||||| || || || || || ||||||||||| |||| || || | ||| || | Sbjct 217 TTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAG 159 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || || |||| ||| || || | ||||||| ||||| ||||||||||| || Sbjct 158 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAAC 99 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || ||||| || || || || |||||||||||||| ||| || Sbjct 98 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 39 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGC 175249 |||||| || || || | || ||||||||||| || Sbjct 38 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 370 bits (410), Expect = 2e-97 Identities = 690/1010 (68%), Gaps = 5/1010 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || | | ||| | ||| | || |||||||| | Sbjct 12152900 TGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGTCT 12152841 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||| ||| | || | || | ||| | || || |||| ||||| Sbjct 12152840 ATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTTGT 12152781 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | ||| ||||||| | || ||| || ||| || Sbjct 12152780 AACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAAAC 12152721 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || | |||||||||||| || | | | |||||| | | |||| ||||||| Sbjct 12152720 CGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCT 12152661 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 |||| | || | || || || ||| ||| | || || || | | | |||||||| Sbjct 12152660 TGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTTGC 12152601 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||| |||| || || || | || | || ||| | ||||| |||||||| || || Sbjct 12152600 TCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGATC 12152541 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 | || | || || || || || || |||||| |||||| |||||||| ||||| Sbjct 12152540 CGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTTTT 12152481 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| | || | || ||||| ||||||||| ||||||||||| || |||||||| Sbjct 12152480 TGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 12152421 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTC--AGGGTTTCCACAACTGGACACTGAAC 176390 || || || ||| ||||| || ||| ||| ||||||| || || |||| | ||||| Sbjct 12152420 AGCGGCTATATTTCGATTC--ATCCTTTTTTCCAAGGGTTT-CATAATTGGATATTGAAC 12152364 Query 176391 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCAT 176450 || || |||||||||||||| | ||| |||| || | || || |||| || || ||| Sbjct 12152363 CCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCAT 12152304 Query 176451 GGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCG 176510 || | |||||| |||||||| ||| ||||||||| || || || ||| ||| Sbjct 12152303 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 12152244 Query 176511 TTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCG 176570 || | | || || | ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 12152243 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 12152184 Query 176571 CAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTC 176630 || |||| |||||||| ||| ||||| |||||| | || |||| |||||| ||||| Sbjct 12152183 TAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGTA 12152124 Query 176631 CCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGT 176690 | || | ||| | ||| | | |||| | | || || ||| | || || || Sbjct 12152123 TCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGT 12152064 Query 176691 GCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTC 176750 || ||||| || || ||| || | | ||||| |||||| | | ||||| |||||| Sbjct 12152063 GCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTTC 12152004 Query 176751 TACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAA 176810 | || || || || ||| | |||||||| | | || |||||||| || | ||| | Sbjct 12152003 AATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAAG 12151944 Query 176811 CCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || ||||| || |||||| || || |||||||| | || ||||| Sbjct 12151943 CCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGC 12151894 >seq7 Length=29178675 Score = 179 bits (198), Expect = 5e-40 Identities = 210/283 (74%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 176352 CTATTGTTTCTT--CAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAG 176409 || ||| ||||| || || || || || |||||| |||||| || ||||||||||||| Sbjct 25949520 CTCTTGGTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAG 25949461 Query 176410 TTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATA 176469 | || ||| |||| || | || || |||| || || ||||| | |||||| ||||||| Sbjct 25949460 TCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATA 25949401 Query 176470 CCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGG 176529 | ||| ||||||||| || || || ||| ||| || | | || || | | Sbjct 25949400 CTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTG 25949341 Query 176530 AAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGT 176589 |||| || ||||| ||||| || || |||||||| ||||| |||||||| |||||||| | Sbjct 25949340 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTT 25949281 Query 176590 TTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 || ||||| |||||| | || ||||||||||| ||||| || Sbjct 25949280 TTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 141 bits (156), Expect = 1e-28 Identities = 167/225 (74%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 174492 AACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCA 174551 || |||||||||||| | || ||||| |||||| | ||||||||||| || || ||||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 174552 ACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGT 174611 ||| ||| | |||||| ||| | | | |||| ||||| || || || || || ||| Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 174612 GAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 174671 ||| | || |||| || || | ||||||||||| || || || ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 174672 AGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCA 174716 | |||| || || || | || || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729676214063480