Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq20831 443 2e-119 seq3 376 3e-99 seq7 181 1e-40 seq2 118 1e-21 >seq20831 Length=3535 Score = 443 bits (490), Expect = 2e-119 Identities = 542/740 (73%), Gaps = 0/740 (0%) Strand=Plus/Minus Query 177891 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 177950 || ||||| || || ||||||| || || | ||| | |||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 177951 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 178010 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 178011 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 178070 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 178071 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 178130 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 178131 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 178190 |||| |||| | || | ||||| | ||||| | | || ||||| |||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 178191 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCA 178250 ||||||||| | |||| | |||||||| || ||||| ||| ||||| || ||||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 178251 GTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGAC 178310 || ||||| ||| | || || ||| || | || || | |||||||| |||||||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 178311 GCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACAC 178370 | ||||| || || ||||||||||| ||||||| ||| |||| ||||| || || ||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 178371 AACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTG 178430 |||||||| |||||||| || |||||||| ||||| || ||||||||||| || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 178431 TTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACA 178490 || ||||| ||||| ||||| ||||| || ||| | | | ||||| || |||| Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 143 Query 178491 GAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCA 178550 ||||| || | ||||| | ||||||||||||||||| || |||||||| || || Sbjct 142 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 83 Query 178551 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCA 178610 || ||||| || || || || |||||||||||||||||| |||||||| || ||||| Sbjct 82 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 23 Query 178611 CTGCACTTCTTCCTCGCAGC 178630 | || |||||| | || || Sbjct 22 TTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 376 bits (416), Expect = 3e-99 Identities = 672/978 (69%), Gaps = 5/978 (1%) Strand=Plus/Minus Query 179257 GCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTG 179316 ||||||| ||||| ||||||||||| || | || |||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 179317 GCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTT 179376 | | |||| | || || || | ||||| || ||||| || || || | ||||||| Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749 Query 179377 CCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGG 179436 ||||| | || ||| || ||| || || || | ||||| |||||| || | | | Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689 Query 179437 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCC 179496 |||||| | | |||| ||||||| ||| | || | |||| || ||||| | Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 179497 AACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCA 179556 || | || || |||| | ||| || |||||| |||| || || || | || |||| | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 179557 TGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTT 179616 || | | ||||||||||||||||| || | | ||||| ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 179617 TTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCT 179676 | |||||||| || ||||| || || ||| |||| || ||||| |||| || || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 179677 CTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTC 179736 |||||| || ||||| |||||||| ||||| || || | ||| | || || ||| Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTT--TTC 12152391 Query 179737 --AGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 179794 |||||||| | || |||| | ||||| || |||||||||||||| | ||| |||| Sbjct 12152390 CAAGGGTTTC-ATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACT 12152332 Query 179795 AGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGA 179854 || | || ||||| | ||||| ||||| | ||||||||| ||||| || | |||||| Sbjct 12152331 CGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 12152272 Query 179855 TGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTC 179914 ||| || |||||||| || || ||| | | || || | ||||| |||||||| Sbjct 12152271 TGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 12152212 Query 179915 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCG 179974 |||||||| || |||||||| ||||| | |||| || |||| ||||| || || || Sbjct 12152211 AATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACG 12152152 Query 179975 GTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGG 180034 ||| | ||||| | ||||| ||||| | || | ||| |||||| || |||| Sbjct 12152151 TTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGG 12152092 Query 180035 CATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGC 180094 | | || || ||| | ||||| |||| || || ||||| ||||| | | | || Sbjct 12152091 AGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGC 12152032 Query 180095 AGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACT 180154 ||| |||||| | | |||||||| ||| | || || || |||||| | || ||||| | Sbjct 12152031 AGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTAT 12151972 Query 180155 ACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGT 180214 ||||| ||| |||| | | ||| | || ||||| | |||||| || || || Sbjct 12151971 TCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGT 12151912 Query 180215 TCTGCCAAGAGGTAATGC 180232 ||| ||| | || || || Sbjct 12151911 TCTACCACGTGGAAACGC 12151894 >seq7 Length=29178675 Score = 181 bits (200), Expect = 1e-40 Identities = 213/285 (75%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 179722 TCTTGCTGTTCCTTC--AGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGG 179779 ||||| |||| ||| |||||||| | || ||||| ||||| || ||||||||||| Sbjct 25949519 TCTTG--GTTCTTTCCAAGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGG 25949463 Query 179780 AGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAA 179839 ||| || ||| |||| || | || ||||| | ||||| ||||| | ||||||||| || Sbjct 25949462 AGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAA 25949403 Query 179840 TACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGA 179899 ||| || | ||||||||| || |||||||| || || ||| | | || || | Sbjct 25949402 TACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 25949343 Query 179900 AGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGC 179959 ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 25949342 TGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGC 25949283 Query 179960 ATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 180004 ||||| || || || ||| | ||||| || ||||| ||||| || Sbjct 25949282 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 118 bits (130), Expect = 1e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 176350 TCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTT 176409 |||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||| | | Sbjct 3660656 TCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCAT 3660597 Query 176410 GTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCC 176469 ||||| ||||| || ||| | || ||| ||||||||||| ||| ||| ||||| Sbjct 3660596 GTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCC 3660537 Query 176470 TGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTAC 176524 | |||||||| || |||| || ||| |||| ||||| | |||||||||| Sbjct 3660536 TCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 3660482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605799231342480