Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq20831 405 6e-108 seq3 358 7e-94 seq7 172 6e-38 seq2 95.1 1e-14 >seq20831 Length=3535 Score = 405 bits (448), Expect = 6e-108 Identities = 536/741 (72%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 158421 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 158480 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 158481 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 158540 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 158541 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 158600 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 158601 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 158660 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 158661 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 158720 |||| |||| | || | ||||| | | || | | |||||||| ||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 158721 TGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCA 158780 ||||||||| | ||| | |||||||| || ||||| ||| |||||||| || || Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 158781 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158840 || || || ||| ||||||| ||| | | || || | |||||||| ||| || ||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 158841 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158900 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 158901 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158960 ||||| ||||||||||| || || ||| | ||||| ||||| |||||||| || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 158961 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 159019 || |||||||||||| | || |||| || | | || | ||||| || |||| Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAA 144 Query 159020 AGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGC 159079 || || || | ||||||| |||||||||||||||||||| || || || || || Sbjct 143 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 84 Query 159080 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 159139 || |||||||| || || || |||||||||||||| ||| |||||||| || ||||| Sbjct 83 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 24 Query 159140 CTTGCACTTCTTCCTTGCTGC 159160 || || |||||| | || || Sbjct 23 TTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 358 bits (396), Expect = 7e-94 Identities = 676/985 (69%), Gaps = 7/985 (1%) Strand=Plus/Minus Query 159935 TTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGC 159994 || |||||||| || |||||||| || | || |||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 159995 GGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCC 160054 | |||| | || || |||| || | ||| |||||||| |||||| | ||||||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 160055 TATCTTGAGGGTGCAAACTTTCTTACAGC-GTCAGTTAGCACTCCAGCTGACGCTATGGG 160113 ||| | || ||| || ||| || || | || || | ||||| ||| | | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCG-ACTCCTGCTAATAGTTTAGC 12152688 Query 160114 TCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCC 160172 |||||| || || || || ||||||| ||| || ||| | ||||| | ||| | Sbjct 12152687 ACATTCT-TTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 160173 AACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCA 160232 || | || || |||| | |||||| || ||| | || || || || |||| | || | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 160233 TGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCG 160291 || | ||||| |||||||| || || || || | | || ||||| ||||| || || Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCA 12152510 Query 160292 TTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCC 160351 ||||||||||| || ||||| ||||| || |||| || || ||| ||||||| || Sbjct 12152509 TTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCT 12152450 Query 160352 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 160411 ||||||| || || || ||||| || || || || ||| ||||| | | || | Sbjct 12152449 GGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TC 12152391 Query 160412 CAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 160471 ||||| ||||| || |||| | ||||| || |||||||||||||| | ||| |||| Sbjct 12152390 CAAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTC 12152331 Query 160472 GGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 160531 || | || ||||| | || || ||||| | ||||||||| || || | | ||||||| Sbjct 12152330 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 12152271 Query 160532 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 160591 || || |||||||| || || ||| | | || || | ||||| |||||||| Sbjct 12152270 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 12152211 Query 160592 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGG 160651 |||||||| || |||||||| ||||| | |||| || |||| ||||| || || || Sbjct 12152210 ATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGT 12152151 Query 160652 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGC 160711 ||| | ||||| | ||||| ||||| | || | ||| | |||| | |||| Sbjct 12152150 TGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGA 12152091 Query 160712 ATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCA 160771 | | || || ||| | || || |||| || || ||||| || || | | ||| Sbjct 12152090 GTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCA 12152031 Query 160772 GCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTA 160831 || |||||| | |||||||||| ||| | || || || || || | || ||||| | Sbjct 12152030 GCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATT 12151971 Query 160832 CGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTT 160891 ||||| ||| | || || || | || ||||| ||| |||| |||| || || ||| Sbjct 12151970 CGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTT 12151911 Query 160892 CTTCCTAGAGGCAACGCCCTTTAAT 160916 || || | || ||||| ||||||| Sbjct 12151910 CTACCACGTGGAAACGCTCTTTAAT 12151886 >seq7 Length=29178675 Score = 172 bits (190), Expect = 6e-38 Identities = 205/277 (74%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 160405 GTTCCTTC-AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTG 160463 |||| ||| |||| ||||| || ||||| ||||| || |||||||||||||| || | Sbjct 25949514 GTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCG 25949455 Query 160464 GTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGT 160523 || |||| || | || ||||| | || || ||||| | ||||||||| || || | | Sbjct 25949454 GTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTAT 25949395 Query 160524 ATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 160583 ||||||||| || |||||||| || || ||| | | || || | ||||| | Sbjct 25949394 TTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 25949335 Query 160584 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 160643 ||||||| |||||||| || |||||||| ||||| || ||||| || |||| ||||| | Sbjct 25949334 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCA 25949275 Query 160644 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 160680 | || || ||| | ||||| || ||||| ||||| || Sbjct 25949274 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 159555 GACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGTGCTTGTAGC 159614 ||||| ||||| |||||||| | ||| || || || || ||||||||| | ||| Sbjct 3660651 GACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGTTCA 3660592 Query 159615 ACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCTTTCTTGGAC 159674 | ||||| ||||| || || || | ||||| ||| |||||| |||| | || Sbjct 3660591 AGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCCTCGAT 3660532 Query 159675 GATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACATCAGACGTA 159734 ||||| || | |||||||||||| |||||||||||| | || ||||| || || || Sbjct 3660531 GATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACCTCTGATGTT 3660472 Query 159735 ACTAT 159739 || || Sbjct 3660471 ACCAT 3660467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552281815695680