Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq20831 441 9e-119 seq3 401 8e-107 seq7 156 5e-33 seq6 114 2e-20 seq2 100 3e-16 >seq20831 Length=3535 Score = 441 bits (488), Expect = 9e-119 Identities = 569/783 (73%), Gaps = 2/783 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCT 178980 ||||| ||||| || | | |||||| | ||| || | || ||| | || || ||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 178981 CCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAAC 179040 || || |||||||| || || |||||||| || |||| || || | || |||||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 605 Query 179041 ATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATC 179100 || || || ||||| || | || | ||| || |||||| | || || ||||| ||| Sbjct 604 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 545 Query 179101 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTC 179160 |||||||| ||||| | ||||| ||||| || ||||| ||||||| |||| | || Sbjct 544 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 485 Query 179161 TTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 179220 | ||||| | | || | | |||||||| ||||||||||||||| || |||| Sbjct 484 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 425 Query 179221 CTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCA 179280 || ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 424 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 365 Query 179281 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATC 179340 || ||| | | || || | |||||||| ||| ||||||| ||||||||| || ||| Sbjct 364 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 305 Query 179341 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 179400 ||||||||||| |||| ||| |||||||||| || || |||||||| ||||||||||| Sbjct 304 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 245 Query 179401 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 179460 || || ||| | ||||| ||||| |||||||| || || | || ||||||||| || Sbjct 244 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGT 185 Query 179461 AGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | || |||| || | ||| || | ||||| || || | || || || | || Sbjct 184 TCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| | ||||||||||||||||| || || ||||| || || || ||||| || || || Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 || ||||||||||||||||| || ||||| || || ||||| || |||||| | || Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6 Query 179640 TGC 179642 || Sbjct 5 GGC 3 >seq3 Length=27950219 Score = 401 bits (444), Expect = 8e-107 Identities = 677/979 (69%), Gaps = 1/979 (0%) Strand=Plus/Minus Query 180052 ACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCCA 180111 || ||||||| ||||| || |||||||| ||| | || |||| ||| ||| | || Sbjct 12152871 ACTGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTT 12152812 Query 180112 TTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTT 180171 | || | |||| | || || || | ||||| || ||||| || || || | ||| Sbjct 12152811 TAGGGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTA 12152752 Query 180172 CTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTA 180231 ||||||| | |||||| || ||| || || || | ||||| |||||| | | Sbjct 12152751 GTTCCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTT 12152692 Query 180232 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGT 180291 | | |||||| | | |||| ||||||| ||| | || | |||| || |||| Sbjct 12152691 TAGCACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGT 12152632 Query 180292 GCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGAT 180351 | ||| | || || |||| | ||| || |||||| |||| || || || |||| | | Sbjct 12152631 GTCAATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTT 12152572 Query 180352 TTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTG 180411 ||||| |||| || |||||||| || || || | || ||||| ||||| || | Sbjct 12152571 TTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCG 12152512 Query 180412 CATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGT 180471 ||||||||||||| |||||||| ||||| || | || || || ||||||||||| | Sbjct 12152511 CATTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAAT 12152452 Query 180472 CCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTC 180531 | ||||||||||||| || |||||| ||||| || || ||| ||||| | || ||| Sbjct 12152451 CTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTT 12152392 Query 180532 TTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATAC 180591 |||||||| | || |||| | ||||| || |||||||||||||| | ||| ||| Sbjct 12152391 CCAAGGGTTTC-ATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTAC 12152333 Query 180592 TAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAG 180651 | || | || |||||| || || ||||| | ||||| || || || | | ||||| Sbjct 12152332 TCGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 12152273 Query 180652 ATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACT 180711 |||| || ||||| || || || ||| | |||| |||| || |||||||| | Sbjct 12152272 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 12152213 Query 180712 CTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGC 180771 | |||||||| || |||||||| ||||| | |||| || |||| ||||| || || | Sbjct 12152212 CAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAAC 12152153 Query 180772 GGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTG 180831 | ||| | ||||| | ||||| ||||| | || | ||| |||||| || ||| Sbjct 12152152 GTTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTG 12152093 Query 180832 GCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAG 180891 | | | || || ||| | ||||| |||| || || ||||| || || | | | | Sbjct 12152092 GAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTG 12152033 Query 180892 CAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGAC 180951 |||| |||||| | | || ||||| ||| | || || || || || || || ||||| Sbjct 12152032 CAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTA 12151973 Query 180952 TACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAG 181011 | ||||| ||| |||| || ||| | || || |||||| | || |||| ||| || | Sbjct 12151972 TTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGG 12151913 Query 181012 TTCTACCAAGAGGTAACGC 181030 |||||||| | || ||||| Sbjct 12151912 TTCTACCACGTGGAAACGC 12151894 >seq7 Length=29178675 Score = 156 bits (172), Expect = 5e-33 Identities = 196/268 (73%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 180535 AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 180594 |||||||| | || ||||| ||||| || |||||||||||||| || ||| |||| | Sbjct 25949504 AGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGG 25949446 Query 180595 GTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATG 180654 | | || |||||| || || ||||| | ||||| || || || | | |||||||| Sbjct 25949445 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 25949386 Query 180655 GAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTA 180714 | || ||||| || || || ||| | |||| |||| || |||||||| || | Sbjct 25949385 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 25949326 Query 180715 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGT 180774 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || || | Sbjct 25949325 TGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 25949266 Query 180775 GGCTTCATTTTTTCATGTTGTTTGTGCC 180802 || | ||||| || ||||| ||||| || Sbjct 25949265 GGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 114 bits (126), Expect = 2e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 178885 AACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCA 178944 || |||||| | || |||| ||||| ||||| ||||||||||||| || | | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 178945 ACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGT 179004 ||| | ||| | | || ||| | || | ||||| || |||||||| || || ||| Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 179005 GAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCA 179064 ||| | || |||| || || | ||||||||||| || || || ||||| || | || Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 179065 AGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCA 179109 | |||| || ||| || | || || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 >seq2 Length=28351830 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 ||| |||||||||| |||||||||||||| | ||| | |||||| ||||| |||||| Sbjct 3660660 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 3660601 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 | |||||| |||||| |||||| || || ||| ||| |||||| || || Sbjct 3660600 TCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGT 3660541 Query 177510 TTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCACC 177569 ||| | ||||| || || || | ||||||| |||| || |||| | ||||| ||| Sbjct 3660540 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 3660481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610117731708480