Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 102 6e-17 seq2 89.7 4e-13 >seq7 Length=29178675 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | |||||| Sbjct 24471025 ATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTGCTGATCTTAAACTGATGG 24470966 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 || | || || || || |||| | |||||||| ||| ||||| ||||| ||||||| Sbjct 24470965 CACTTCCTCCATGCCACATGTTTTCACAGTTTTATGTTGCGAATGGAGAACTTTCATGTC 24470906 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATG 41172 || ||||||| | |||| |||||||| || || || ||||||||||| || || Sbjct 24470905 AAATGTATCAGCGTTCAGCCGACATGGGTCTTGGCGTACCGTTTAACATTGCCTCATACT 24470846 Query 41173 CTCTGCTCACGTATATGATTGCACACGTT 41201 |||| || |||| || | || |||||| Sbjct 24470845 CTCTTCTTACGTGCATTCTCGCTCACGTT 24470817 >seq2 Length=28351830 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATACGA 40983 |||| | |||||||||| | ||||| | |||||| | ||| || || || | || Sbjct 16613759 TATGCATGCTGATTATACTGGTCAAGGATTTGATCAACTCGCAGAT-GTAATCGACAAGA 16613817 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 | ||| | |||| ||| || || || ||||| | || ||||| || | || | Sbjct 16613818 TCAAAAACAATCCTGATGATCGGCGCATTATATTATCGGCTTGGAATCCTTCTGATCTTA 16613877 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAA 41102 | ||||||||| | || || || || |||| ||||| || ||| ||| | || || Sbjct 16613878 AGTTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTCTATGTT-GCAGAAGGGGAG 16613936 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||||||| ||||||| | |||| || ||||| || || || ||||||||||| Sbjct 16613937 CTCTCATGTCAAATGTATCAGCGTTCAGCGGATATGGGTCTTGGTGTGCCGTTTAACATT 16613996 Query 41163 GC 41164 || Sbjct 16613997 GC 16613998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397321477414855