Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq6 105 6e-18 seq7 98.7 8e-16 seq1 93.3 4e-14 seq4 84.2 2e-11 >seq3 Length=27950219 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| ||||| || | || || || ||||| || ||||| || | Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| ||||||||||||||||| | || || | ||||| ||||| || Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| || | | |||| || ||||| | | ||| || Sbjct 5226942 ATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACC 5227001 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250 || || ||||| | |||||||| ||||||||||| ||||||||||| || Sbjct 5227002 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 5227051 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| |||||||| || | || | | || | || || ||||||||||| Sbjct 5226624 GTTGATTCCTTTTGGATATTGTAATC-CGCAAGAGTACGACCATCCTCTAGCTGTTTACC 5226682 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || || | |||||| ||||| | | || |||||||| ||||||| ||| Sbjct 5226683 GGCAAAGATAAGTCTCTGTTGGTCCGGAGAGATTCCTTCTTTATCTTGGATCTTGGCTTT 5226742 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||||| | ||| || || || ||||| | |||||| || || || Sbjct 5226743 GACGTTGTCAATGGTGTCTGAGCTTTCGACCTCGAGTGTTATGGTTTTGCCAGTTAGGGT 5226802 Query 27230 TTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||||||||||||| || || Sbjct 5226803 TTTCACAAAGATTTGCATACCTCCT 5226827 >seq6 Length=37079636 Score = 105 bits (116), Expect = 6e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTC 27091 ||||| |||||||| | ||||| ||||| || |||||||||||| || ||| || | Sbjct 19970001 CGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCCAGAGTTCTGC-C 19970059 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||| ||||| || || |||||| |||| | | || || ||||| || | ||||||||| Sbjct 19970060 GTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGAATACCCTCTTT 19970119 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||| ||| || | | | || | ||||| | | ||||||||| | || || Sbjct 19970120 GTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGAT 19970179 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || |||| || || |||||||| |||||| || Sbjct 19970180 GGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCATACCT 19970219 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || || ||||| || ||||| ||||||||||| || | | || | Sbjct 13447901 CGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACCA 13447842 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || ||||| | || | | ||| || ||||| || | ||| || ||| Sbjct 13447841 TCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTTA 13447782 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | | || | |||||| | | || || || ||||| || Sbjct 13447781 TCTTGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACCTCGAGAGTAATG 13447722 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| || || || |||||||||||| Sbjct 13447721 GTCTTACCAGTCAAGGTCTTAACGAAGATTTGCATA 13447686 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || ||||| ||||||||| | | | || | Sbjct 19969773 CGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCA 19969832 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || || ||||||||||||| || ||||| || | || ||||| Sbjct 19969833 TCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTG 19969892 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | |||||||| | || || || || || || Sbjct 19969893 TCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATG 19969952 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| || || || ||||| |||||| Sbjct 19969953 GTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 19969988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 |||||||| | || || || || ||||| || || || | || | | || | || || Sbjct 33565292 ACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATC-CGCAAGCGTTCGACCATCCTC 33565234 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || || | ||||| | |||||| ||||| || | || || || || Sbjct 33565233 AAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTG 33565174 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | ||||||| | ||||||||||| || |||| ||| Sbjct 33565173 AATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTT 33565114 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || |||||||||||||| |||||| || || Sbjct 33565113 ACCAGTGAGGGTTTTCACAAAGATCTGCATACCTCCT 33565077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || || || |||||||| || | || | | || |||| || ||||| || || Sbjct 13447363 GTAGACTCCTTCTGGATATTGTAATC-CGCAAGAGTACGACCGTCCTCAAGCTGCTTTCC 13447305 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || | | ||| |||||||| || | ||| || ||||| ||||| ||| Sbjct 13447304 AGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATCTTAGCTTT 13447245 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | ||||| || ||||| |||| ||| || |||| || Sbjct 13447244 CACGTTATCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATAGTTTTACCAGTCAAGGT 13447185 Query 27230 TTTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 13447184 CTTCACAAAGATCTGCATA 13447166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||| ||||| || || || || |||||||||||||| || | || | Sbjct 13448129 CGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCCAAAGTCCGACCA 13448070 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || || | ||||||||||| || ||||| || | ||||| || Sbjct 13448069 TCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTG 13448010 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | || | ||||||| | || || || ||||| || Sbjct 13448009 TCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCCACCTCAAGAGTGATT 13447950 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||| || || || || || |||||| Sbjct 13447949 GTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCATA 13447914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || |||||||| || |||| | || || Sbjct 19969551 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 19969610 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| ||| | || |||||||| || ||||| || | ||| || || || | Sbjct 19969611 AGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGG 19969670 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || ||||| || || || | || Sbjct 19969671 ATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTT 19969730 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||| || || |||||| Sbjct 19969731 CCAGTAAGAGTCTTCACGAAAATCTGCATA 19969760 >seq7 Length=29178675 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | |||||||| | || || || || ||||||||||| || | Sbjct 2571068 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCA 2571009 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || |||||||||||||| || | ||||| | ||||| || || || Sbjct 2571008 AGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGG 2570949 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| || | | || | |||||| | |||||| Sbjct 2570948 ATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACT 2570889 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || |||| ||| || || || ||||||||||| |||||||| Sbjct 2570888 TCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCAT 2570842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| || || | || | |||| || || || || || || ||||| || | | Sbjct 2570840 CCACCGCGTAAACGAAGGACAAGGTGTAGAGTTGACTCCTTCTGGATGTTGTAATC-CGC 2570782 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | || ||||| |||||||| ||| | ||||| | ||||| ||||| || Sbjct 2570781 AAGAGTACGACCATCCTCGAGTTGTTTACCAGCGAAGATGAGCCTCTGTTCGTCCGGAGG 2570722 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| |||||| || | | || | |||||| | ||||| Sbjct 2570721 GATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAAC 2570662 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||| ||| || || || ||||||||||| |||||||| Sbjct 2570661 TTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCAT 2570614 >seq1 Length=25238555 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| | || || | |||||||| | ||| || ||||| || || |||| || || Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | ||||||| | ||||| || || | || | ||| ||||| ||||| || Sbjct 18011411 AGTGTTCTTC-CGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGG 18011353 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||||| ||||| | || | ||||||| | |||||| Sbjct 18011352 AATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAAC 18011293 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||| || |||||||||||||| ||||| Sbjct 18011292 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 18011245 >seq4 Length=23266485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || || || |||||||| || | || |||||||||| || Sbjct 22703225 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCGTCTTCGAGTTG 22703284 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||| |||||| | || | || ||||||||||| || | || || || || |||||| Sbjct 22703285 TTTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 22703344 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | || | || || | | |||||| || ||||| || | || || || Sbjct 22703345 GGCCTTGACATTGTCGATTGTATCGGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGT 22703404 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| ||||| ||||| Sbjct 22703405 TAGGGTTTTCACGAAGATCTGCAT 22703428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424790577101352