Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq1 129 7e-25 >seq6 Length=37079636 Score = 150 bits (166), Expect = 2e-31 Identities = 283/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | || || || | | ||||| Sbjct 13420288 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAACACCGGTGTTACCTTCAAAT 13420347 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || |||| ||||||| || |||||||| |||||||| || | Sbjct 13420348 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCTCC---A 13420404 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||||| |||||||| || Sbjct 13420405 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 13420464 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||||| ||| | | || |||||||| || ||| |||||| ||||| ||| Sbjct 13420465 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACA 13420524 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 |||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 13420525 AACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCA 13420584 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || ||| || | ||||| || |||||||| || ||| || || ||||| Sbjct 13420585 ATAGCTTTTGCCAAAAGGGTTTTCCCCGTACCAGGAGGACCAATAAGGAGAACGCCTTTC 13420644 Query 11840 GGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 |||||| ||||||| || |||||||||| | ||| ||||| ||||||| Sbjct 13420645 GGGATCCGGGCACCAACCGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA 13420699 Score = 114 bits (126), Expect = 2e-20 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| | Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 7695413 Query 11599 CATACC--ACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | || |||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || ||| ||| ||| | ||||| | ||| | |||||| ||||| || Sbjct 7695352 CAAGGTGCTTTGGATTT----GGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAAC 7695297 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 |||||| || | ||| || || | | |||| || || ||| || || || || Sbjct 7695296 ACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCCTC 7695237 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| ||| | || ||||| ||||| || || Sbjct 7695236 TCCGGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 >seq1 Length=25238555 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || |||||||| || || | || | ||| ||||| || || | | || || || Sbjct 3040834 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3040893 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || || || | | ||||| ||||||||||| || || | |||||| Sbjct 3040894 GCAACTACGATAACACCGGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 3040953 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || || ||||| |||||||| || |||| || | | | ||| | || Sbjct 3040954 AGAGTCTGCTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGTCTACCA 3041010 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 3041011 ACAGCATCTATTTCATCAACAAAAACAATGCACGGCGCATTTTCCTTGGCTTTTTTGAAA 3041070 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 |||||||| |||||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 3041071 AGATCGCGCACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCGAG 3041130 Query 11747 CACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 | || | ||| || ||| | |||||| ||||||||| || | | ||| || || Sbjct 3041131 -ATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 3041189 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 ||||| || ||| | || || | ||| ||||||||||||||| || | Sbjct 3041190 AGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 3041249 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||| | ||| ||||| Sbjct 3041250 CCTCTCAGGCTTCTTTAAAAACTCCAC 3041276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627813986541600