Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 95.1 1e-14 >seq5 Length=22804910 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| ||||| | ||||| | ||| || ||||| | ||| |||||||| || Sbjct 2412325 GTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCATGAGTCC 2412384 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || ||||| | ||||||||||| ||| || || ||||||||||| || || || ||||| Sbjct 2412385 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACA 2412444 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 |||||||| | || ||| ||||| || Sbjct 2412445 AGCGAACGCTACGATACGTTCAGCGAA 2412471 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||||||||||||||| ||||| || || ||||| | |||||||| || Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCA-- 7695413 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 14270 CATGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| | ||| ||||| | ||| | || || ||||| ||||| Sbjct 7695352 CAAGG-TGCTTTGGATTTGGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACACC 7695294 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 || || | ||| || || | | || | ||| || ||| || ||| | || || Sbjct 7695293 AACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCCTCTCC 7695234 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| ||| | || ||||| |||||||| || Sbjct 7695233 GGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618220517950760