Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 136 5e-27 seq6 114 2e-20 seq1 114 2e-20 >seq5 Length=22804910 Score = 136 bits (150), Expect = 5e-27 Identities = 279/412 (68%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 94782 || ||| |||| |||| ||| || |||||||| |||||||||| ||| | ||| Sbjct 2412543 GCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATCGAT 2412484 Query 94783 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 94842 | || | | || ||||| || || | || || || |||||||| ||||| ||| Sbjct 2412483 GGA---TCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTC 2412427 Query 94843 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 ||||||||||||||||| | |||| ||||| ||||| || || |||||||| ||| | Sbjct 2412426 TTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTA 2412367 Query 94903 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 94960 ||||| ||||| | ||||| | ||||| || | ||| || || || | | | Sbjct 2412366 ACTTTCTCTAACGAATTAATCTCAAGAGACGAAGGTTTACACTGTGATTTCGCTTGTTTG 2412307 Query 94961 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGG 95020 | ||| || | || |||| || | | || | | | ||||||||| | Sbjct 2412306 A--TTTACACTCTGTTACGTACCAAGCTTAGTGAGGAAAGAGTGAAGTCTATTGTTTGCG 2412249 Query 95021 AAGCCGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTA 95080 | || ||||||||||||| || || ||| || || ||||| || || | | |||| Sbjct 2412248 ATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGAAGCGCTTCCTTGTGCGTTGGTTGGTA 2412189 Query 95081 TGAATTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTT 95132 ||||| |||| ||| | | |||||||||| ||| | ||||| ||||| Sbjct 2412188 TGAATGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTT 2412137 >seq6 Length=37079636 Score = 114 bits (126), Expect = 2e-20 Identities = 282/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| || ||| || | | ||||| Sbjct 13420288 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAACACCGGTGTTACCTTCAAAT 13420347 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 13420348 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---CCA 13420404 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| | || || |||||||| ||||||| ||||| ||||| Sbjct 13420405 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 13420464 Query 9734 GGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||||| || ||| ||| ||||| || || | ||| || ||||| || Sbjct 13420465 GGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCGAC 13420523 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | | | | || | || ||| || ||| || |||||| | Sbjct 13420524 AAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAG 13420582 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| ||| || | ||| || || |||||||| || ||| ||||| | ||| Sbjct 13420583 CAATAGCTTTTGCCAAAAGGGTTTTCCCCGTACCAGGAGGACCAATAAGGAGAACGCCTT 13420642 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 || ||| ||| ||| || | ||||||| || | ||| ||||| ||||||| || Sbjct 13420643 TCGGGATCCGGGCACCAACCGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAACTT 13420702 Query 9972 C 9972 | Sbjct 13420703 C 13420703 Score = 86.0 bits (94), Expect = 7e-12 Identities = 193/284 (68%), Gaps = 16/284 (6%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| ||||| || || ||||| || ||||| | |||||||| | Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 7695413 Query 9673 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || |||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 9784 || || ||| ||| || | ||||| | ||||| || || || | || || Sbjct 7695352 CAAGGTGCTTTGGATTTGGCCTTC----TCAAACAAATCCC-TA-ACCCTAGACGCACCA 7695299 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 |||||||| || | ||| || || | | || | ||| || ||| || || | Sbjct 7695298 ACACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCC 7695239 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || || | |||| ||| | ||| ||||| ||||| || || Sbjct 7695238 TCTCCGGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 >seq1 Length=25238555 Score = 114 bits (126), Expect = 2e-20 Identities = 302/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 3040834 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3040893 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 3040894 GCAACTACGATAACACCGGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 3040953 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | ||| || || | ||||||||| || |||| || | | | ||| | || Sbjct 3040954 AGAGTCTGCTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGTCTACCA 3041010 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||||| || || ||||| || |||||| || || || Sbjct 3041011 ACAGCATCTATTTCATCAACAAAAACAATGCACGGCGCATTTTCCTTGGCTTTTTTGAAA 3041070 Query 9761 AGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 ||||| || ||| ||| ||| || ||||| ||||||||||| ||||| | | | | Sbjct 3041071 AGATCGCG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG 3041128 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | |||| | |||||| ||| | |||||| || |||||| || | | || ||| Sbjct 3041129 -AGATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTA 3041187 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAG 9937 || ||||| || ||| | ||||| ||||| || |||||||| ||| || | Sbjct 3041188 CCAGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTG 3041247 Query 9938 TATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| | ||| ||||| | ||| Sbjct 3041248 AACCTCTCAGGCTTCTTTAAAAACTCCACCACTTC 3041282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583058328304040