Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 >seq5 Length=22804910 Score = 118 bits (130), Expect = 1e-21 Identities = 365/558 (65%), Gaps = 14/558 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||| | | |||| |||| |||||||| | ||||||||| Sbjct 2412882 TTTCCAATTCACTACCCACAGATCTGGGAAATGTACAAGAAAGCCGAAGCATCATTCTGG 2412823 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 | | ||| || | || ||| | |||| || ||||| || ||||| ||| Sbjct 2412822 ACAGCCGAAGAAGTAGATCTCTCACAAGACAACCGTGACTGGGAAAATCTCAACGACGGA 2412763 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 || | || |||||||| || || || |||||||| || ||| ||||| || | Sbjct 2412762 GAACGTCACTTCATCAAACACGTACTCGCTTTCTTCGCCGCATCTGACGGAATCGTACTC 2412703 Query 59742 GAAAATATAGA--CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 ||||| | | || || | || ||||| || | |||| || || | |||| Sbjct 2412702 GAAAACCTCGCTTCACGATTCATGTCA--GATGTACAAGTCTCCGAAGCGCGTGCATTCT 2412645 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| | | ||| |||||| || |||| ||| || || | |||| Sbjct 2412644 ACGGATTCCAAATCGCT-ATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCGAC 2412586 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCC 59918 | | |||| ||| |||| | | | ||| |||||||| || || ||| || Sbjct 2412585 ACTTACATCAAAGATAACAAAGAAAGAGATCATCTATTCCGTGCAATCGAAACGATTCCT 2412526 Query 59919 GCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGC---ATCATT 59974 |||| | ||||| |||||| ||| ||||| || |||| | | |||| Sbjct 2412525 TGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATCGA----TGGATCTCAAACATT 2412470 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || ||||| || |||| || || || || ||||| || ||||||||||| || ||||| Sbjct 2412469 CGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTTCTG 2412410 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 | | ||||||||||| || || ||||| |||||||| || | | |||||| ||||| | Sbjct 2412409 TTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTAACTTTCTCTAACGAATT 2412350 Query 60095 GATTTCCCGGGACGAGGG 60112 || || | ||||| || Sbjct 2412349 AATCTCAAGAGACGAAGG 2412332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548334386472240