Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 132 5e-26 seq8 89.7 6e-13 seq7 89.7 6e-13 seq4 89.7 6e-13 seq8335 87.8 2e-12 seq6 87.8 2e-12 >seq5 Length=22804910 Score = 132 bits (146), Expect = 5e-26 Identities = 308/459 (67%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| || ||||| || || || | | |||||||| |||||||| ||| Sbjct 2412332 CCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCATGAGTCCACGTTTC 2412391 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | ||||||||||||| |||||| || ||||| ||||| || || Sbjct 2412392 TTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACAAGCGAAC 2412451 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || || | |||| ||||| | | | | ||||||||| ||||||| |||| Sbjct 2412452 GCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGTCATAGCCCATGAAGCT 2412511 Query 74949 TTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGA 75008 || | || ||| | || ||||| || |||| || | | |||| | | Sbjct 2412512 TTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGATGATCTCTTTCTTTGTTA 2412571 Query 75009 TCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAAC 75068 || |||| | |||| | | ||| || ||| |||| ||||| || ||| | | | Sbjct 2412572 TCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAATGGATATTCTCAAT-AGC 2412630 Query 75069 GA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGA-AAAATTCA 75126 || ||| | ||||||| | ||||| || | | |||||||| ||| | | || Sbjct 2412631 GATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC---TGACATGAATCG 2412687 Query 75127 TG--TCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTT 75184 || ||| || || | ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 2412688 TGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAGCGAGTACGTGTTT 2412747 Query 75185 GATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 ||| ||||| || || |||| |||| || ||||| || Sbjct 2412748 GATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTC 2412786 >seq8 Length=40886855 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 33699198 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33699139 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 33699138 TGAGCTACGAGAGC 33699125 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 19967113 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 19967172 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 19967173 TGAGCTATGAAAGC 19967186 >seq7 Length=29178675 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 24877180 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24877121 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 24877120 TGAGCTACGAGAGC 24877107 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2387329 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2387388 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2387389 TGAGCTATGAAAGC 2387402 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 26777332 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26777391 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 26777392 TGAGCTACGAGAGC 26777405 >seq4 Length=23266485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6071115 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6071056 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 6071055 TGAGCTACGAGAGC 6071042 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 11864294 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11864353 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 11864354 TGAGCTATGAAAGC 11864367 >seq8335 Length=130648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79627 CTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTG 79685 |||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| || Sbjct 77201 CTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTG 77260 Query 79686 AGCTACGAAAGCAAA 79700 |||||||| ||| || Sbjct 77261 AGCTACGAGAGCTAA 77275 >seq6 Length=37079636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 11946842 AGATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 11946901 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 11946902 CAACTGAGCTATGAAAGC 11946919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547026040805800