Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq7 86.0 5e-12 >seq2 Length=28351830 Score = 123 bits (136), Expect = 2e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || ||||||||||||||||| ||| || || |||||||| ||| | Sbjct 16614097 TGATTTTTGTACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCA 16614038 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || |||||| | ||| | || | | | |||| || | ||||| || ||||| Sbjct 16614037 CACACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 16613978 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 |||||||| || ||||| | ||| |||| ||| || ||||||||||| | ||||||||| Sbjct 16613977 AGACCCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCAACATAG 16613918 Query 118660 AACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAG 118719 ||||| | ||||| |||||||| || |||| | | || | | ||||||||| Sbjct 16613917 AACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAA 16613858 Query 118720 GCTGTTAA 118727 || | ||| Sbjct 16613857 GCCGATAA 16613850 >seq7 Length=29178675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || || || ||||||||||| ||||| | ||| |||| ||| || || || || Sbjct 24470860 TTAAACGGTACGCCAAGACCCATGTCGGCTGAACGCTGATACATTTGACATGAAAGTTCT 24470919 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || || |||||||||||||| | ||||| |||||||| || |||| | || Sbjct 24470920 CCATTCGCAACATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGA 24470979 Query 118705 TGGGCAGGATTCCAGGC 118721 | ||||||||||| || Sbjct 24470980 TCAGCAGGATTCCAAGC 24470996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414336516570844