Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 125 5e-24 seq6 93.3 3e-14 >seq3 Length=27950219 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||||||||| || || || ||| |||| ||||||||| || Sbjct 5227048 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTCC 5226989 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || ||||| || || ||||||||||| | || ||| || Sbjct 5226988 GACACCGTCGAAAACGTCAATGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAA 5226929 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| || | || |||||||| ||||| | || |||| || | |||| | ||||||||| Sbjct 5226928 CAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAAC 5226869 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||| ||| | || |||||| |||||||| | || || Sbjct 5226868 ATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 5226822 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | || || || ||||| | || || |||||| || Sbjct 13447395 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCC 13447454 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||| || |||||||| ||| |||| ||| | Sbjct 13447455 GATACTATTGATAAT--GTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACC 13447512 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || ||||| || || | || |||| | | ||| | ||||||| Sbjct 13447513 AGCAGAGATTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACA 13447572 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| ||| | |||||||| |||||| | ||||| || Sbjct 13447573 ACATCCAGAAAGAGAGTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 13447621 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| ||||||||||| || || || |||| ||||| ||| | Sbjct 19969759 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAAGTCGAGAGCTCT 19969700 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| |||||| | || ||| | Sbjct 19969699 GACACAATTGACAAT--GTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCACCGGACC 19969642 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| || || || ||||| | || || | |||| ||| | || |||| Sbjct 19969641 AGCAGCGTCTAATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTACA 19969582 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | || ||||| | ||| | ||||| || Sbjct 19969581 ACATCCAGAAGGAGTCTACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 19969533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || | || || ||||| | Sbjct 13446939 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 13446998 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| ||||| || ||| || || || || ||||| |||| ||| | Sbjct 13446999 GATACGATCGACAAT--GTTAAAGCGAAGATTCAGGATAAGGAAGGGATTCCTCCGGATC 13447056 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || || || || |||||||| || | || | |||| | ||||||| Sbjct 13447057 AGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGGCGTACCTTGGCGGATTACA 13447116 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || ||| | || ||||| |||||| | ||||| || Sbjct 13447117 ATATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 13447165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355741955145717