Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq5 120 2e-22 seq6 102 6e-17 seq3 98.7 7e-16 seq1 96.9 2e-15 seq8 89.7 3e-13 >seq4 Length=23266485 Score = 122 bits (134), Expect = 6e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || |||||||||||||| ||||| || Sbjct 22703431 AAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAATCA 22703372 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || || ||||| ||||| | || || || Sbjct 22703371 TCCGATACAATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGAATCCCACCGGA 22703313 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| || ||||| || ||||| |||||||| ||||||| ||| ||| | | || || Sbjct 22703312 TCAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTGGCTGACTA 22703253 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 22703252 CAACATCCAGAAGGAATCAAC 22703232 Score = 95.1 bits (104), Expect = 8e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| |||| || ||||||||| | | || ||||| || || ||||| ||| Sbjct 12669084 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 12669143 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || |||| ||||||||||| || |||||||| || | ||| | || || Sbjct 12669144 GATGGTCGAACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 12669203 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||| ||| Sbjct 12669204 AGGCTTAGAGGTGGA 12669218 >seq5 Length=22804910 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || ||||||||||| ||||| || | Sbjct 22133578 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTTGAATCATCA 22133637 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | || || ||||| ||||| | || || || || Sbjct 22133638 GATACCATCGACAATGTCAAAGC-CAAGATCCAAGACAAGGAAGGAATCCCACCGGACCA 22133696 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || |||||||| || || || |||||||| ||||||| ||| ||| | | || ||||| Sbjct 22133697 GCAACGTTTAATCTTCGCTGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTACAA 22133756 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 22133757 CATCCAGAAAGAATCAAC 22133774 >seq6 Length=37079636 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || ||||| || ||||| || | | Sbjct 19969759 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAAGTCGAGAGCTCT 19969700 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| |||||| | || || || || Sbjct 19969699 GACACAATTGACAATGTCAAGGC-TAAGATCCAGGACAAGGAAGGTATCCCACCGGACCA 19969641 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| || || || ||||| || || || | |||||||| | || ||||| Sbjct 19969640 GCAGCGTCTAATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTACAA 19969581 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 19969580 CATCCAGAAGGAGTCTAC 19969563 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| || || || || || || || |||||||| || || ||||| || | | Sbjct 33564856 ATGTAGATATTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCA 33564915 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| || ||||| ||||| | || || || || Sbjct 33564916 GACACCATTGACAATGTTAAAGCTAAAA-TTCAAGACAAGGAAGGAATCCCTCCGGACCA 33564974 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | || ||| | | |||||||| Sbjct 33564975 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAA 33565034 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || | || || || | |||||| ||||||| Sbjct 33565035 CATCCAGAAGGAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGG 33565082 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||| | || || || || |||||||| || || || | | Sbjct 13447915 ATGCAGATTTTCGTTAAGACCTTGACCGGGAAGACAATCACTCTTGAGGTGGAGAGCTCA 13447974 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 13447975 GACACAATTGACAATGTGAAGGCTAAGA-TCCAGGACAAGGAGGGAATCCCACCGGACCA 13448033 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || || | || ||||| | || ||||| Sbjct 13448034 GCAGCGTCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTCGGACTTTGGCTGACTACAA 13448093 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 || || || |||||||||||||| Sbjct 13448094 TATTCAGAAGGAGTCCACATTACA 13448117 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | ||||| || || || ||| | |||||||| | | Sbjct 13447395 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCC 13447454 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || |||| | | |||||||| ||| | || || || || Sbjct 13447455 GATACTATTGATAATGTGAAGGCAAAGA-TCCAAGACAAAGAGGGTATTCCTCCGGACCA 13447513 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || || || ||||||| | ||||| | |||||||| Sbjct 13447514 GCAGAGATTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAA 13447573 Query 23790 CATACAAAAAGAG 23802 ||| || |||||| Sbjct 13447574 CATCCAGAAAGAG 13447586 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| || || || |||||||| | | Sbjct 33565084 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 33565143 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| ||||| | || || || ||| Sbjct 33565144 GACACCATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 33565203 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || |||||||| || || | || || | | ||||| ||| Sbjct 33565204 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAACGCTTGCGGATTATAAC 33565263 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | ||||| || || | || |||| || Sbjct 33565264 ATTCAGAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 33565310 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || ||||| || |||||||| | | Sbjct 13448143 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAGACAATCACACTTGAAGTTGAGAGCTCT 13448202 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || || || || |||||| | || || || || Sbjct 13448203 GATACTATTGATAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCACCGGACCAG 13448262 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || || || || || || || | || || | | ||||||||| Sbjct 13448263 CAGCGTCTAATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGTACACTGGCGGATTACAAC 13448322 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 13448323 ATTCAGAAAGAGTCGAC 13448339 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || || || ||||| || || | | Sbjct 19969987 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTCGAGAGCTCA 19969928 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||||||||| | || || || || Sbjct 19969927 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCTCCGGACCAG 19969868 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || || || || | || || |||| ||| |||||| Sbjct 19969867 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACCTTAGCCGACTACAAC 19969808 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 19969807 ATTCAGAAGGAGTCGAC 19969791 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| ||||| || ||||||||||| || || | Sbjct 13446939 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 13446998 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || ||| || || ||||| | || || ||||| Sbjct 13446999 GATACGATCGACAATGTTAAAGC-GAAGATTCAGGATAAGGAAGGGATTCCTCCGGATCA 13447057 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || ||| ||||||| | || || || | |||||||| Sbjct 13447058 GCAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGGCGTACCTTGGCGGATTACAA 13447117 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 13447118 TATCCAGAAGGAATCAAC 13447135 >seq3 Length=27950219 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || ||||| || || || || || || || || | | Sbjct 5227048 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTCC 5226989 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| || |||| | || || || ||||||||||| | || || || ||| Sbjct 5226988 GACACCGTCGAAAACGTCAATGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAA 5226929 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| ||||| || || |||| || || || | ||||||||| Sbjct 5226928 CAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAAC 5226869 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || | || || ||| | | ||| ||||||| Sbjct 5226868 ATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 5226822 >seq1 Length=25238555 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| || |||| |||||||||||| | || || ||||| || |||||||| ||| Sbjct 21980305 GACAAAGAGGGAATACCACCAGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAA 21980246 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| || |||||||| || |||||||| || | ||||| ||||| Sbjct 21980245 GATGGTCGTACACTAGCGGACTACAACATTCAGAAAGAGTCGACGCTTCATTTGGTTTTG 21980186 Query 23824 AGG 23826 ||| Sbjct 21980185 AGG 21980183 >seq8 Length=40886855 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || | | Sbjct 1188846 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 1188787 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| ||||| | || || ||||| Sbjct 1188786 GACACAATAGACAATGTGAAGGCTAAGA-TTCAGGACAAGGAAGGGATTCCTCCGGATCA 1188728 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| || ||||| ||||| | | | ||| | | |||||||| Sbjct 1188727 GCAGAGACTTATCTTCGCCGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAA 1188668 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||||| ||| Sbjct 1188667 CATCCAGAAGGAATCGACTCTTCATTTGGTT 1188637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337895197587668