Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 >seq5 Length=22804910 Score = 150 bits (166), Expect = 2e-31 Identities = 418/628 (67%), Gaps = 21/628 (3%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || |||||||||||||| || | ||||||||| || ||| Sbjct 2412308 AAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTT 2412367 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || || ||||| | || | || |||||||| || || | || || ||||| ||| Sbjct 2412368 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 2412427 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 ||||| ||||| || || |||||||| | || |||| | |||| Sbjct 2412428 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-------TTTGAGA 2412480 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | | ||||| | | ||||| |||||| || |||| || ||||| || | || Sbjct 2412481 TCCATCGATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGAT 2412540 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 || |||| | | | |||| |||| || |||||||| | || || Sbjct 2412541 TGCACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGA 2412600 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTT 4899 |||||| || ||||| ||||| || ||||| || || |||||||| || ||| | |||| Sbjct 2412601 ATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTT 2412659 Query 4900 CTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 | | ||||| || || | ||| |||| | | | ||||||| ||| || |||||| Sbjct 2412660 CGGAGACTTGTACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCA 2412718 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC-TTAAGTTT 5017 || || || || || | || || || |||| |||| || | | || || || Sbjct 2412719 GATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATT 2412777 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 || ||||| | |||| | | ||| |||||||| | ||||| || || ||||| Sbjct 2412778 TTCCCAGTCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTC 2412837 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGT 5136 ||||| |||||||| ||| || | || || ||||| |||| || ||| ||||||| Sbjct 2412838 GGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACAT-ACAGAATCTGT 2412896 Query 5137 -TGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 || ||| || ||||| || || |||| Sbjct 2412897 CTGGTGTT-GGAGTAAGGAGAGGCTCTT 2412923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426905061192743