Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 235 8e-57 seq7 122 1e-22 seq6 86.0 9e-12 >seq5 Length=22804910 Score = 235 bits (260), Expect = 8e-57 Identities = 608/913 (67%), Gaps = 20/913 (2%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| ||||| || | || || ||||||||||| || |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||||| |||||| || ||| | ||| | | || | | | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 || ||||| ||||| || || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || || || || | ||||||| || || || ||||| | || Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 48089 CGATGTTACCGTTTCCTCACTTGG-TGGATAC--AACAAATGTTTAAACATTAAACATGC 48145 || | || |||||||||| | | | ||| |||| | || |||| | ||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 |||||||| || | |||||| ||||| |||||||||||||| || || | ||| || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||||||||| || ||||| || || | ||| || ||||| |||||||| || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCAC 48323 ||| || || || || || | | || | | || | | | | ||||| Sbjct 2412436 TTCAACACAAGCGAACGC--TACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAA 2412493 Query 48324 CGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || | ||||| ||| ||||| | |||||||| || ||||| || ||| || || Sbjct 2412494 -GTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAG 2412552 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | | | |||| ||| ||||||| | |||||| || | | |||| |||||| || || Sbjct 2412553 ATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGA 2412612 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || ||||| ||||| || || || |||||||| || | |||||| | || ||||| Sbjct 2412613 ATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTAC 2412672 Query 48503 CTCCGTACAA-AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | ||| |||||| ||| | || || ||| ||||| ||| || || || | Sbjct 2412673 ATCTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 2412731 Query 48562 ATGCTAATACATGTTTAATAAAATA---TTTTTCGTTGGAAGTCAGTTTATTCCAGTCAT 48618 | || | ||| ||||| || || | || | ||| | | || || | ||||||| Sbjct 2412732 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT---TGAGATTTTCCCAGTCAC 2412788 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 | | |||| ||| | |||||||||||| |||||||| |||||||| || ||||| || | Sbjct 2412789 GGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGT 2412848 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| | ||| || | ||| || ||||| || ||| ||||| | ||| || | Sbjct 2412849 ACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGGTGTTGGAG 2412908 Query 48739 CAAGGATAGGTTC 48751 ||||| ||| || Sbjct 2412909 TAAGGAGAGGCTC 2412921 >seq7 Length=29178675 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | |||| | || |||| ||| |||| |||||| Sbjct 28704345 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACCA 28704286 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||| |||||| || ||| ||||||||||||| | || || |||||| ||| || Sbjct 28704285 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGAA 28704226 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| || || |||||| ||||| || || Sbjct 28704225 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 28704166 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||| |||||| |||| || |||||| |||||| Sbjct 28704165 CCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 9e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||||||||| || || | || ||||||||||| || |||||| | | ||| | || | Sbjct 31021969 AGTTCCTGCGTTGAAAAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 31022028 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| ||| || || || || || | ||| || || || || || || | ||||| Sbjct 31022029 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 31022087 Query 78517 ACATATGCTGAGGTCTTTCAAC-CGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 78575 ||| || ||||| || ||||| | || | | | ||| || | ||||||| | || Sbjct 31022088 GCATGTGTTGAGGCCTCTCAACAACTGTTCCT-TGGACTTTTAAGAGGTATGATCTCTCA 31022146 Query 78576 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| || ||||| || | |||| ||| || | ||||| || || Sbjct 31022147 AGCGTTTTGAATCCAAAGTAATCGTATTCAAAATCACGGTCGTAGATGAT 31022196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | | |||||||| |||||| Sbjct 31021629 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGAAGCATTGGAACAATACCA 31021688 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||| || ||| ||||||||| |||| || |||||| || || Sbjct 31021689 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 31021748 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 31021749 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 31021808 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || |||||||| ||||| Sbjct 31021809 CCCTCGATGCTGTCATCTTTCATG 31021832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694427654409440