Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 241 2e-58 seq7 125 1e-23 seq6 95.1 2e-14 >seq5 Length=22804910 Score = 241 bits (266), Expect = 2e-58 Identities = 594/889 (67%), Gaps = 14/889 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | || || ||||||||||| || |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| |||||| | ||| ||| | ||| | | || | | | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| ||||| || || |||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || || | ||||||| ||||| || ||||| | | || Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 46578 CGATGTTACTGTTTCCTCACTTGG--TGG-ATGCATCAAATGTTTAAACATTAAACATGC 46634 || | ||| |||||||||| | ||| | | | || | || |||| | ||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||||||| || | ||||| ||||| |||||||||||||| || || | ||||| Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| |||||||| || || ||||| || || | ||| || ||||| |||||||| || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT--GGCATCATTATGAATCCAC 46812 ||| ||| ||||| || || | | || || | | | ||| || ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCC--ATCGATCCAA 2412493 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||| ||| || || | |||||||| || ||||| || ||| || ||| Sbjct 2412494 GTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGA 2412553 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 | | |||| | ||||||| | || || || | | |||| |||||| |||||| Sbjct 2412554 TGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAA 2412613 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || || || |||||||| || || |||||||| || | ||||| | | ||||| Sbjct 2412614 TGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACA 2412673 Query 46993 TCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 |||| ||| |||||| || | || || || ||||| ||| || || || || Sbjct 2412674 TCTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAA 2412732 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATTCCAGTCATTGA 47110 || | ||| ||||| || || | ||| || || || || || | ||||||| | Sbjct 2412733 AGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGT 2412791 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 | |||| ||| | |||||||||||| |||||||||||||| || || ||||| || |||| Sbjct 2412792 TGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACA 2412851 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 | | ||| || | | || || || ||||| ||| ||||| | ||| Sbjct 2412852 TTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGG 2412900 >seq7 Length=29178675 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | |||| | || |||| ||| |||| ||| || Sbjct 28704345 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACCA 28704286 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||| ||||| || ||| ||||||||||||| ||||| |||||| ||| || Sbjct 28704285 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGAA 28704226 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || |||| || ||||| |||||| || ||||| || Sbjct 28704225 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 28704166 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| |||||||||||| |||| || |||||| |||||| Sbjct 28704165 CCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | || | Sbjct 31021969 AGTTCCTGCGTTGAAAAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 31022028 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| ||| | | || ||||| | ||| || || || ||||| || | ||||| Sbjct 31022029 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 31022087 Query 77112 ACATATGCTGAGGTCGTTCTAC-AGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170 ||| || ||||| | || || | | || | | | ||| || | ||||||| | || Sbjct 31022088 GCATGTGTTGAGGCCTCTCAACAACTGTTCCT-TGGACTTTTAAGAGGTATGATCTCTCA 31022146 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | ||||| || ||||| || | |||| ||| || | ||||| || || Sbjct 31022147 AGCGTTTTGAATCCAAAGTAATCGTATTCAAAATCACGGTCGTAGATGAT 31022196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712686913734720