Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq20831 495 5e-135 seq3 408 5e-109 seq7 192 7e-44 seq2 118 1e-21 seq6 82.4 9e-11 >seq20831 Length=3535 Score = 495 bits (548), Expect = 5e-135 Identities = 583/786 (74%), Gaps = 2/786 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | ||||| ||||||||| | || || || || | || |||||||| | Sbjct 785 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 726 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||| || || | ||| | ||||| | || || | || ||| | |||||||| Sbjct 725 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || || ||||| || ||||| |||| || ||||| | || || || || || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| ||||| | ||||| ||||| || ||||| |||||||| |||| | || Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||| | |||| || || || |||||||||||||||||| | || ||| Sbjct 485 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 426 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| ||||||||||||||||| |||||| ||| || |||||||| |||||||| || Sbjct 425 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 366 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || | || || | |||||||| |||| |||||||||||| || || || Sbjct 365 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 306 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| |||| |||| ||||| || ||||||||||| || |||||||| Sbjct 305 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 246 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | ||||| |||||||| ||||| || || | || ||||| ||||| || Sbjct 245 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGG 186 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| |||| ||||| | | | | || | |||||||| || ||| || || | | Sbjct 185 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 127 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| ||||| ||||||||||| || ||||||||||| ||||||||||| || |||| Sbjct 126 GTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 67 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || |||||||||| |||||| || ||||||||||||||| | || |||||| | | Sbjct 66 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 7 Query 183974 CTGCTT 183979 | |||| Sbjct 6 CGGCTT 1 >seq3 Length=27950219 Score = 408 bits (452), Expect = 5e-109 Identities = 693/1003 (69%), Gaps = 1/1003 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | || ||||||| ||||| || |||||||| || | || | Sbjct 12152892 TGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12152833 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || | ||| | || || |||| ||||| || | Sbjct 12152832 TTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTTGTAACTTCAT 12152773 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| || || || Sbjct 12152772 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCA 12152713 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||| ||| | | Sbjct 12152712 TTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCAC 12152653 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 || ||||| | | || |||| ||| | || || |||| | |||||| || ||| ||| Sbjct 12152652 AAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACG 12152593 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 | || ||||| | ||| |||| ||| | || || |||||| | ||| ||| Sbjct 12152592 GCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 12152533 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | || || || ||||| || || || |||||||| |||||||| |||||| ||| ||| Sbjct 12152532 TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCC 12152473 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | || || || || || || || |||||||| || || ||||| || || || | Sbjct 12152472 TAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 12152413 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | ||| ||||| | | || ||||||| || || || |||| ||||| ||||| || | Sbjct 12152412 TATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGAACCCATTTCATA 12152354 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| || | ||| | || || | |||||||| | || || ||||||| ||||| Sbjct 12152353 TGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTG 12152294 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 ||||||||||| | | ||||||||| || ||||| |||||| || || | | | Sbjct 12152293 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 12152234 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | |||| |||||||| ||||| |||||||| || ||| | || |||||| | |||| | Sbjct 12152233 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTG 12152174 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 | |||| ||| |||||| |||||| | ||||||| ||| | ||||| | || | | Sbjct 12152173 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGTATCGGTAACTG 12152114 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | |||| | | |||| | | || || ||| | ||||| |||| ||||||| Sbjct 12152113 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACT 12152054 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 | || ||||| | ||||| || ||| | | || ||||| ||| |||| || | Sbjct 12152053 TCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAA 12151994 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 |||| || || || |||||| | ||||| |||||||| | | ||| | || ||||||| Sbjct 12151993 ATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAA 12151934 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || |||| | ||| || || | ||| | || |||||||| Sbjct 12151933 ACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq7 Length=29178675 Score = 192 bits (212), Expect = 7e-44 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 186472 TCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCC 186531 ||||||| || || || ||||| | ||| ||||| || |||||||| || || ||| | | Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449 Query 186532 TTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAG 186591 | || | |||||||| | || || ||||||| |||||||||||||||| | | ||||| Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389 Query 186592 ATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATT 186651 |||| || ||||| |||||| || || | | || |||| |||||||| |||| Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329 Query 186652 CGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGC 186711 | |||||||| || ||| | || |||||||| ||||| || |||| ||| |||||| | Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269 Query 186712 GTTGGCTTCATTTCTTCATGCTCTTTGTTCC 186742 ||||| | |||||||| ||| | ||||| || Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171006 CTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGT 171065 || || || ||||||||||||||| | |||||| || || || ||||||||| | ||| Sbjct 3660654 CTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGT 3660595 Query 171066 TCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTT 171125 || | |||||| || ||| || || ||| |||||||||||||| || || |||||| Sbjct 3660594 TCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCCTC 3660535 Query 171126 GATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||| ||||||| ||| || |||| || || | | |||||||| Sbjct 3660534 GATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 3660482 >seq6 Length=37079636 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/225 (68%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 183220 AACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCA 183279 || || || || || | || |||||||| |||||||||| || | ||| | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 183280 ACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGC 183339 || | || | | || ||| | ||| ||||||| || || || || || || || Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 183340 GAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 183399 ||| | ||| |||| || || | ||||||||||| || || || ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 183400 TCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCA 183444 |||| || ||| | | || || || || |||||||||||| Sbjct 27053718 ACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621854456036520