Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq20831 499 3e-136
seq3 441 8e-119
seq7 192 7e-44
seq6 109 6e-19
seq1 102 9e-17
>seq20831
Length=3535
Score = 499 bits (552), Expect = 3e-136
Identities = 582/783 (74%), Gaps = 2/783 (0%)
Strand=Plus/Minus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|||||||||||| |||| || || |||||| | || | || ||||| || || ||
Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725
Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046
||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | ||||||
Sbjct 724 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666
Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106
||| || || || ||||| || || ||||| || |||| || || | || ||||||||
Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606
Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166
|| || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| ||
Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546
Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226
||||||||| ||| | || |||||||| |||||||| ||||||| |||| ||||
Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486
Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286
| ||||| | |||| | | ||| ||||||||||||||||||||| || |||
Sbjct 485 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 426
Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346
||| |||||||||||||||||| || ||||| || |||||||| || || || | |||
Sbjct 425 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 366
Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406
|| ||| || | || || | |||||||| ||| ||||||| |||||||| || ||
Sbjct 365 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 306
Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466
|||||| || ||||||| ||| | || |||||||||||||||||||| || ||||||||
Sbjct 305 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 246
Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526
|| || ||| | || ||||| ||||| || ||||| || | || ||||| ||||| ||
Sbjct 245 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGG 186
Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586
||| |||| |||||| || | | || ||||| |||||||| || || | ||
Sbjct 185 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126
Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646
||||| || || || ||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66
Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706
|| |||| |||||||| ||| |||||||| || ||||| | || |||||| | ||
Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6
Query 164707 AGC 164709
||
Sbjct 5 GGC 3
>seq3
Length=27950219
Score = 441 bits (488), Expect = 8e-119
Identities = 691/985 (70%), Gaps = 9/985 (1%)
Strand=Plus/Minus
Query 165189 TTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGG 165248
|| |||||||| || |||||||| || | || ||||| ||| ||| | ||| | |||
Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807
Query 165249 GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCC 165308
| |||| | || || | || || || || ||||||||||| ||| | || ||||||
Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747
Query 165309 TATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGT 165368
||| | || ||| || ||| || || || |||| ||||| || | | | |
Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687
Query 165369 CATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAA 165428
|||||| | || | || ||||||| ||| | ||| | || || | || ||||| |||
Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627
Query 165429 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 165488
| || || |||| | ||||||| || ||| |||| || |||||| | ||| |||| |||
Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567
Query 165489 CTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAATGCTATTGC 165544
| || || |||||||| || ||| || || ||| || ||||| ||||| || ||
Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGA----TCCGTTCAATTGCGCCCTTATAATGCAATCGC 12152511
Query 165545 TTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATC 165604
||||||||||| || ||||| || ||| ||| | || || ||||| ||||| |||||
Sbjct 12152510 ATTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATC 12152451
Query 165605 GTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCT 165664
|||||||| || || || || || || || || || |||||| | || || |
Sbjct 12152450 TGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-T 12152392
Query 165665 CCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTT 165724
||||||||| ||||| |||| |||| || ||||| |||||||| || | ||| | |
Sbjct 12152391 CCAAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACT 12152332
Query 165725 AGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGA 165784
|||| || |||| | || |||||||||| ||| ||||| |||||||| | ||||||
Sbjct 12152331 CGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 12152272
Query 165785 TGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTC 165844
|||||| ||||| || ||| || ||| | ||||| | || |||||||||||
Sbjct 12152271 TGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 12152212
Query 165845 CATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCG 165904
|||||||| |||||||| || ||||| | | ||||| ||||||| |||||| ||
Sbjct 12152211 AATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACG 12152152
Query 165905 TTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGG 165964
|||| | || |||| |||| | ||||| | || | || | |||| ||| || ||||
Sbjct 12152151 TTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGG 12152092
Query 165965 TATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGC 166024
| | || || || | || || |||| ||||| || || || ||||| | | ||
Sbjct 12152091 AGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGC 12152032
Query 166025 TGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACT 166084
|| || ||| | | ||||| || ||| |||| ||||| || || | || ||||| |
Sbjct 12152031 AGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTAT 12151972
Query 166085 CCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGT 166144
||||| ||| |||| || |||| | |||||||| ||| || | |||| ||| || ||
Sbjct 12151971 TCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGT 12151912
Query 166145 CTTGCCAAGAGGCAACGCACTTTAA 166169
| ||| | || ||||| ||||||
Sbjct 12151911 TCTACCACGTGGAAACGCTCTTTAA 12151887
>seq7
Length=29178675
Score = 192 bits (212), Expect = 7e-44
Identities = 205/271 (76%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 165664 TCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCT 165723
|||||||||| ||||| ||||| ||| || ||||| |||||||| || || ||| |
Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449
Query 165724 TAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 165783
| |||| || |||| | || |||||||||| ||| ||||| |||||||| | |||||
Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389
Query 165784 ATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATT 165843
||||||| ||||| || ||| || ||| | ||||| | || ||||||||||
Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329
Query 165844 CCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGC 165903
| |||||||| |||||||| || ||||| || || ||||| ||||||| |||||| |
Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269
Query 165904 GTTGGCTTCACTTCTTTATGCTCTTTGTTCC 165934
||||| | || ||||||||| | ||||| ||
Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238
>seq6
Length=37079636
Score = 109 bits (120), Expect = 6e-19
Identities = 158/222 (71%), Gaps = 1/222 (0%)
Strand=Plus/Minus
Query 163955 AATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGACT 164014
|||||| | || | || ||||| || || |||||||||| | | || | || |||
Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 27053836
Query 164015 ACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAA 164074
| ||| | ||||| ||||| | | ||||||| || || || ||||| || || |||
Sbjct 27053835 TCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAA 27053776
Query 164075 CCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCT 164134
| || |||| || || | ||||||||||| || || || ||||| |||| ||| ||
Sbjct 27053775 TCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 27053716
Query 164135 TCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCA 164176
|| ||||| || |||| || ||||| ||||||||||||
Sbjct 27053715 TCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675
>seq1
Length=25238555
Score = 102 bits (112), Expect = 9e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598
||||||||| ||| ||| | || ||||||||||| ||||| || | ||| | ||
Sbjct 6597790 GTGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTA 6597849
Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658
||| || ||||| || |||| || ||||| || ||| ||||||||||| |||| ||
Sbjct 6597850 CTCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGA 6597909
Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694
||| |||||| |||| ||||||| ||||||||
Sbjct 6597910 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAAT 6597945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557460817245720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |