Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=37079636 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || |||||||| || ||||| ||| ||||| ||| | | Sbjct 19970215 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAAGTTGAAAGCTCC 19970156 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || ||||| |||||||| || |||| || || Sbjct 19970155 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 19970096 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | |||| || || || ||| | || || | |||| ||||||| || ||| Sbjct 19970095 CAAAGATTGATTTTCGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 19970036 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 19970035 ATCCAGAAAGAGTCTACTCTCCATTTGGTGTTGCGTCTACGTGGTGG 19969989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| ||||| |||||||| ||||| ||| | | Sbjct 13447395 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCC 13447454 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || ||| || |||||||| || |||| || || Sbjct 13447455 GATACTATTGATAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 13447514 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | || || || || | ||||| | |||| |||| ||||| || Sbjct 13447515 CAGAGATTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 13447574 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||| || ||||| ||||||||||| || ||||| Sbjct 13447575 ATCCAGAAAGAGAGTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 13447621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421668434176696