Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq20831 480 1e-130 seq3 412 4e-110 seq7 170 2e-37 seq6 105 8e-18 >seq20831 Length=3535 Score = 480 bits (532), Expect = 1e-130 Identities = 578/783 (74%), Gaps = 2/783 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | |||||||| || | || ||||| ||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717 ||||||||||| | | | || || | ||| || |||| ||| | ||||||||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 605 Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837 || ||||| ||||| || ||||| ||||| ||||||||| | || || || || ||| Sbjct 604 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 545 Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897 |||||||| || || | ||||| ||||| ||||| || ||||||| |||| || | Sbjct 544 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 485 Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957 | ||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 484 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 425 Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017 || ||||||||||| ||||| ||| ||||| || ||||| || || || ||| ||||| Sbjct 424 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 365 Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077 || ||| | |||| || | |||||||| ||| ||||| | |||||| || || ||| Sbjct 364 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 305 Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137 ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 304 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 245 Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197 || |||||||| || || |||||||| || || || || | || ||||| ||||| ||| Sbjct 244 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGT 185 Query 178198 TCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256 || |||| ||||| | | | | || | |||||||| || || ||| | || | || Sbjct 184 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126 Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 ||||| ||||| ||||||||||| || |||||||| || |||||||||||||| || || Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376 || ||||||||||||| || |||||||| || ||||| | || |||||| | || Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6 Query 178377 AGC 178379 || Sbjct 5 GGC 3 >seq3 Length=27950219 Score = 412 bits (456), Expect = 4e-110 Identities = 702/1014 (69%), Gaps = 3/1014 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | | | || |||||||| |||||||| ||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | || | || | |||| |||| || |||| || Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || ||||||||||| || | ||| ||| ||| | || || || ||||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| | || ||||||||| | | | | |||||| | | | || |||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 | ||||| || ||||||| || ||| ||| | || || || | | ||||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || ||| |||| || || || | ||| |||| ||| | || || |||||| | || || Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 || || | | || ||||| ||||||||||| || ||||||||||| ||||| ||||| Sbjct 12152542 TCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGT 12152484 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 | ||| | || || ||||| || || || || |||||||||||||| ||||| Sbjct 12152483 TTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12152424 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || || || || || || ||| | || || | || || || || || |||| | || Sbjct 12152423 TGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGAA 12152365 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || | ||| | || |||| || |||| || || ||||| Sbjct 12152364 CCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCA 12152305 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 12152304 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 12152245 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 12152244 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 12152185 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 | ||||||| | || || |||||| |||||| ||||||||| |||||| ||||| Sbjct 12152184 ATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGT 12152125 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 | || | ||| | |||| | |||| | | || || || | ||||| | Sbjct 12152124 ATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATG 12152065 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || | | | || || || ||| | | || ||||| || Sbjct 12152064 TGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTT 12152005 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 | |||| || || || || || || |||||| | |||||||||||||| | | ||| | Sbjct 12152004 CAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAA 12151945 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| | ||| || || | ||| | || |||||||| Sbjct 12151944 GCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 179730 GAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCA 179789 ||||| |||||||| || || || || || || |||||| | |||||||||||||| | Sbjct 27467489 GAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCT 27467548 Query 179790 GTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCT 179849 ||||| || ||||||||| || |||| ||||| || || | ||| | || |||||| Sbjct 27467549 CAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCT 27467608 Query 179850 CT 179851 || Sbjct 27467609 CT 27467610 >seq7 Length=29178675 Score = 170 bits (188), Expect = 2e-37 Identities = 199/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 179352 CAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTG 179411 || || || || || ||||| ||||| || || |||||||| || || ||| | ||| Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 179412 GGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGAC 179471 |||| || |||| || || |||||||||||||| ||||| || || | |||||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 179472 AGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCG 179531 |||| ||||||||||| || || | || || |||| || || || ||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 179532 ATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGT 179591 ||||| || || ||||| || ||||| || |||||||| | || || |||||| ||| Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 179592 TGGCTACATTTCTTTATGTTGTTTGTTCC 179620 ||| |||||||||||||||| ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 105 bits (116), Expect = 8e-18 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 177622 AACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCT 177681 || |||||||| || | || ||||| ||||| ||||||| ||||| | | | || Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 177682 GCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGT 177741 || | ||| | |||| ||| | ||| ||||||| || || || || || || ||| Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 177742 GAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCT 177801 ||| | || |||| || || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 177802 TCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCA 177846 |||| ||||||| | | || || || || |||||||||||| Sbjct 27053718 ACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596100199409360