Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq20831 446 2e-120 seq3 437 1e-117 seq7 197 2e-45 >seq20831 Length=3535 Score = 446 bits (494), Expect = 2e-120 Identities = 568/782 (73%), Gaps = 0/782 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| |||||| || ||||| || | || ||||| || || || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | ||| || ||||| ||||| | |||||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 605 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || |||| || || ||| | || || || || ||| Sbjct 604 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 545 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||| | |||||||| ||||||| |||| |||| Sbjct 544 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 485 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | ||||| | | || | | ||| |||||||||||||||||| | | ||| Sbjct 484 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 425 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 424 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 365 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || | ||||| |||| ||||| || ||||| | ||||||||| || ||| Sbjct 364 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 305 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| |||||||||||||| || |||||||| Sbjct 304 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 245 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || | ||||| || ||||| ||| Sbjct 244 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGT 185 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || ||||| ||| | || | |||||||| || || || || || | ||| Sbjct 184 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 125 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||| ||||||||||| || |||||||| || || ||||| ||||| || || Sbjct 124 TACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 65 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 64 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 5 Query 170132 GC 170133 || Sbjct 4 GC 3 >seq3 Length=27950219 Score = 437 bits (484), Expect = 1e-117 Identities = 687/982 (70%), Gaps = 1/982 (0%) Strand=Plus/Minus Query 170631 TTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGC 170690 ||||| ||||| || |||||||| || | || ||||| ||| ||| | || | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 170691 GGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCG 170750 | ||| | || || | || ||||| || ||||| || || ||| | || ||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 170751 TACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 170810 || | |||||| ||||| || || || | || || |||||| || | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 170811 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAA 170870 |||||| | | |||| ||||||| ||| | || | ||||| || |||| ||| Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627 Query 170871 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 170930 | || || |||| | |||||| || ||| |||| || ||||| | ||| |||| ||| Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567 Query 170931 CTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTC 170990 | || || |||||| | ||| ||| | | || || ||||||||||| ||| Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTC 12152507 Query 170991 TCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGT 171050 |||||||| |||||||| ||||| || |||| || ||||| || || || || || Sbjct 12152506 TCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGT 12152447 Query 171051 TGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAA 171110 |||||||| || ||| ||||| || || || || || || ||| | || || | ||| Sbjct 12152446 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAA 12152388 Query 171111 GGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGC 171170 || || || || |||| | |||| ||||||||||||||||| || | ||| | |||||| Sbjct 12152387 GGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGC 12152328 Query 171171 GGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGT 171230 | || |||| | || |||||||||| ||| ||||| |||||||| | |||||||||| Sbjct 12152327 GCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGT 12152268 Query 171231 GATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATG 171290 ||| ||||| || || || ||| || | ||||| | ||||| || ||||| ||| Sbjct 12152267 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 12152208 Query 171291 GTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGG 171350 ||||| ||||| || || ||||| | | ||||| | || || |||||| |||||| Sbjct 12152207 GTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGG 12152148 Query 171351 TTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATT 171410 || ||||||| |||| | ||||| | || | ||| | ||| | ||| ||| || | Sbjct 12152147 TTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTA 12152088 Query 171411 ATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCA 171470 | || || ||| | || || | || ||||| ||||| ||||| | | ||||| Sbjct 12152087 GTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCG 12152028 Query 171471 GAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGT 171530 |||||| | | || ||||| ||| |||| || || || || || || |||||| ||||| Sbjct 12152027 GAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGT 12151968 Query 171531 GCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTA 171590 || |||||||| | |||| | || ||||||||| || | |||| ||||| |||||| Sbjct 12151967 GCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTA 12151908 Query 171591 CCTCGTGGCAATGCACTTTGAT 171612 || ||||| || || |||| || Sbjct 12151907 CCACGTGGAAACGCTCTTTAAT 12151886 >seq7 Length=29178675 Score = 197 bits (218), Expect = 2e-45 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 171108 CAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTC 171167 ||||| || || || |||||| ||| ||||||||||||||||| || || ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 171168 GGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGAT 171227 |||| || |||| | || |||||||||| ||| ||||| |||||||| | ||||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 171228 GGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCT 171287 |||||| ||||| || || || ||| || | ||||| | ||||| || ||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 171288 ATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGT 171347 |||||||| ||||| || || ||||| || || ||||| | || || |||||| ||| Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 171348 TGGTTGCATTTCTTTATGCTGTTTGTTCC 171376 ||||| |||||||||||| | ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591992825727920