Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq3 91.5 1e-13 seq8 86.0 6e-12 >seq6 Length=37079636 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| |||||||| || | ||| |||||||||||| || ||||| | Sbjct 13448141 CCACCACGGAGACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCC 13448082 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || || || || || ||||| ||||||| || Sbjct 13448081 AAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGG 13448022 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| || |||| || | || | ||| || || |||| Sbjct 13448021 ATTCCCTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCA-ATTGTGTCT-GAGCTCTCC 13447965 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| |||||||||||||| Sbjct 13447964 ACCTCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 13447915 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||||||||||||||| ||||||| Sbjct 19969761 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 19969820 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | ||| || | || || |||||||| || || || || || ||||| |||||| | ||| Sbjct 19969821 AAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 19969880 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || || |||||| || | || || | ||| | | | |||||| ||| || Sbjct 19969881 ATCCCT-TCTTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCT---CT 19969935 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 19969936 CGACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| || || | || || || | || ||||||||||| ||||| || Sbjct 33565046 TCCTTCTGGATGTTGTAATCCGCAAGAGTTCGACCATCCTCGAGCTGCTTACCGGCAAAG 33564987 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | ||| ||||||| || | | ||||||| | ||| |||| |||| ||| Sbjct 33564986 ATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGT-CTTGAATTTTAGCTTTAACATT 33564928 Query 41792 GAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | | ||||| ||| ||| || || | || ||||||||||| || || ||||| Sbjct 33564927 GTCAATGGTGTCTGAGCT---CTCGACTTCTAGGGTAATCGTTTTACCAGTAAGTGTCTT 33564871 Query 41848 TACGAAAATCTGCAT 41862 || || |||| ||| Sbjct 33564870 GACAAATATCTACAT 33564856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||| ||||| |||||| || ||||||||||||||||| || | || || || Sbjct 33565301 AGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCAAGCGTTCGA 33565242 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGGAACGCTCTC 41763 | || || || || || || || || || || | |||||||||| | |||| | || || Sbjct 33565241 CCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCT-TC 33565183 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCA 41819 ||||| | ||| | || || | ||| | | | ||||| ||| ||| || || | Sbjct 33565182 CTTGT-CTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCT---CTCAACTTCTA 33565127 Query 41820 CCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||||||| || || || || || || |||||||| Sbjct 33565126 GGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| ||||||||||| || || | Sbjct 13448369 CCACCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCC 13448310 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 13448309 AGTGTACGACCATCCTCAAGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 13448250 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| ||| || |||| ||| | | ||| || ||| ||| Sbjct 13448249 ATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTATCAATAGTATCAGAGCT---CTC 13448194 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||| |||||||||||||| Sbjct 13448193 AACTTCAAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 13448143 >seq3 Length=27950219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || || ||||||||| ||||||||||| | ||| || | Sbjct 16879372 AGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCAGCGAGTGTCCTT 16879313 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||||||||| || | ||| | ||||| || | | ||| Sbjct 16879312 CCATCTTCAAGCTGCTTACCGGCGAATATGAGTCTCTGCTCGTCCGGTGGGATTCATTCC 16879253 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | | ||||||| || || || | || Sbjct 16879252 TTGTCC-TGGATCTTAGCCTTGACGTTGTCAATAGTGTCGAAGCTTTCAACTTCGAGGGT 16879194 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||| ||||| || ||||||||||| Sbjct 16879193 AATGGTCTTGCCTATCAAAGTCTTCACAAAAATCTGCAT 16879155 >seq8 Length=40886855 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||||||||| ||||||||||| | Sbjct 1188848 CCACCACGAAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCTGCT 1188907 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| | || || |||||||| ||||| || || || | ||| ||||||| Sbjct 1188908 AGGGTGCGTCCATCTTCTAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCG 1188962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462143516945200