Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq18099 140 3e-28 >seq18099 Length=159039 Score = 140 bits (154), Expect = 3e-28 Identities = 491/745 (66%), Gaps = 25/745 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || ||||| | ||| | || || ||||| ||||| || || | || | ||| |||| Sbjct 20940 TGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAACTCC 20881 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| |||||| | | | | | |||| ||||| || | | | || Sbjct 20880 ATCCAATCAAACGGATTACTCACACCATACACTTTACCATACCCAAGCGCACCTAACAAC 20821 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 |||||||| ||||| || ||||| || | ||| ||||| | ||||| || | | ||| Sbjct 20820 CTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA-ACGC 20762 Query 16856 ACC-GGAAGAGCTTC-CGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT-- 16911 || ||||| || || | | ||| || | ||| || ||||||| || | ||| Sbjct 20761 ACAAGGAAGCGCGTCACATACAAACTCTCT-CTCAATCTCAACCGCATCACACACAATCG 20703 Query 16912 ACTAGCAACTCGTTCCTCGG-ACGGT--GTATGTTTAAGATGTTTAAACATCAGACATGC 16968 ||| |||| |||||| | | | ||| || ||| || |||| ||| ||| || Sbjct 20702 ACTTC--ACTCTTTCCTCACTAAGCTTCGTACGTAACAGA-GTATAAA--TCAAACAAGC 20648 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 |||||| || || | || |||||||| ||| | |||||||| || || || || || Sbjct 20647 GAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGG 20588 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||| |||||||| | ||| || |||| ||| || ||||| ||||||||||| Sbjct 20587 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 20528 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCG-TCTTTGTTACGAATC 17146 || || | || ||||| | | ||||| ||| | | | | | || | || ||| Sbjct 20527 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCAT----CG-ATC 20473 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || || |||| | ||||| | | | ||| |||||||| || || ||| Sbjct 20472 CAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAAT 20413 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || | ||| |||| | || | || || || |||| || || ||||| || Sbjct 20412 AAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCT 20353 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTG 17325 || || || ||||| || || || || |||||||| || ||| || ||||| | | ||| Sbjct 20352 GAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTTG 20294 Query 17326 AACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 || || || | ||||||| || || |||||| ||||| ||||| ||||||| Sbjct 20293 TACATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGA 20235 Query 17385 AAAACGCCAATATATGCTTAATGAA 17409 | || || | || || || ||||| Sbjct 20234 AGAAAGCGAGTACGTGTTTGATGAA 20210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517359445317000