Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq18099 140 3e-28 >seq18099 Length=159039 Score = 140 bits (154), Expect = 3e-28 Identities = 386/581 (66%), Gaps = 13/581 (2%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| || || || || ||||||||||| ||| | ||||| || |||||||| Sbjct 20653 ACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAA 20594 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || ||||| ||| |||||||| | |||||| |||| | || || || || ||||| Sbjct 20593 ACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAA 20534 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||| |||||| | || || || | | ||||| ||| | || | | || || Sbjct 20533 TATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCAT--CG 20476 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||| || |||||| ||||| | | | |||| |||||||| || || Sbjct 20475 -ATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACG 20417 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 || || | ||| |||| | |||| | || || || || | || | | ||||| Sbjct 20416 GAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACAT 20357 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCGCTA 16559 ||||| || || ||||| || || || || ||||| ||||| ||| || || || | | Sbjct 20356 CTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGA 20298 Query 16560 TTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCA 16618 |||||| || || | |||||| || ||||| || ||||| |||||| ||| Sbjct 20297 CTTGTACATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCG 20239 Query 16619 GCAAAAAACGCCAATATGTGCTTAATGAA---ATATTTTTCGTCAGATGTAAGAATATGC 16675 || || || || | || ||| || ||||| | || | |||| | || ||| | | | Sbjct 20238 GCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTC-GTTG--AGATTTTCC 20182 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || || |||| || | ||| |||||||| | ||||| ||| || | || Sbjct 20181 CAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 20122 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || || ||||||| ||| || | ||| || || ||||| Sbjct 20121 TTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAA 20081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511230450633000