Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq13163 116 3e-21 >seq13163 Length=108863 Score = 116 bits (128), Expect = 3e-21 Identities = 252/369 (68%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | ||||| || ||| | ||| || || | || |||| || || || || Sbjct 36487 CAAGGATTTGATCAACTCGCAGA-TGTAATCGACAAGATCAAAAACAATCCTGATGATCG 36545 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 || || || ||||| |||||||||| ||| | || |||| ||| |||||||| Sbjct 36546 GCGCATTATATTATCGGCTTGGAATCCTTCTGATCTTAAGTTGATGGCACTTCCTCCATG 36605 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 |||| ||| ||||| || |||||| | || || | || || ||| | || ||| | Sbjct 36606 CCACATGTTTGCACAGTTCTATGTTGCAGAAGGGGAGCTCTCATGTCAAATGTATCAGCG 36665 Query 19049 ATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTA 19108 || | ||||||||| ||||| || ||||| ||||||||| || | |||||||| | Sbjct 36666 TTCAGCGGATATGGGTCTTGGTGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTG 36725 Query 19109 CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGC 19168 |||| | || || || | ||| | || ||||| | ||| || |||||||| Sbjct 36726 CATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTACCCATCTTATTGGGGATGC 36785 Query 19169 ACATATTTACTTGAATCATATAGATGCTT-TAAAAGTGCAGCTAGCTCGATCC-CCAAAA 19226 ||| | ||| |||||| | || || | | ||| ||| || | |||| |||||| Sbjct 36786 TCATGTGTACAAAAATCATGT-GAGGCCTCTGCAAGAGCAACTT-CAGAATCCACCAAAA 36843 Query 19227 CCTTTTCCT 19235 ||||||||| Sbjct 36844 CCTTTTCCT 36852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399363895819875