Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13163 114 9e-21 seq2366 89.7 4e-13 >seq13163 Length=108863 Score = 114 bits (126), Expect = 9e-21 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| |||| |||| || ||||| || |||| | || ||||| | Sbjct 36788 TGAGCATCCCCAATAAGATGGGTAAAATCACCAGGAACAAGATCACACACGTGAGCGAGT 36729 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | |||||||| ||| Sbjct 36728 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGACCCATATCCGCT 36669 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| |||||| || |||| Sbjct 36668 GAACGCTGATACATTTGACATGAGAGCT 36641 >seq2366 Length=14026 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/206 (71%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 || ||||| | ||||| || | |||||| || |||||||||||||| || || | Sbjct 9555 ACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAGA 9614 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||| | |||| || || |||||||| Sbjct 9615 CCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTCGCA-ACATAAAA 9673 Query 101875 TTGACTTAATACA--TGACAAGGCGGCA---ACACCATTTTAGGAATGTCTGAAACATTC 101929 || | || ||| || || || || | || || |||| || || | | |||| Sbjct 9674 CTG--TGAAAACAAGTGGCATGGAGGAAGGGCCATCAGTTTAAGA---TCAGGAGGATTC 9728 Query 101930 CAAGCACACATTAACATCCTTCTATC 101955 ||||| |||||| |||| || ||| Sbjct 9729 CAAGCCGACATTATAATCCGTCGATC 9754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361124510897525