Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq24711 95.1 1e-14
seq8442 89.7 4e-13
seq7697 89.7 4e-13
seq5576 89.7 4e-13
seq12325 86.0 5e-12
seq25505 84.2 2e-11
seq14351 84.2 2e-11
>seq24711
Length=27656
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || | || || ||||||||||| || ||||| ||| ||| | |
Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | ||| || ||| || ||||| ||| | || || ||
Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| ||| | |||||||| || || || || ||||| || |||| |||| ||||||||
Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||| || ||||||||||| ||||||| || |||| || ||
Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 4878
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | || ||||| || ||| | ||||| || || || ||| |||||
Sbjct 4289 GATAAGGAAGGTATTCCTCCGGATCAGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAA 4348
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
|| || |||| ||||||||||| |||||||||||||| |||||| |||||||
Sbjct 4349 GACGGACGTACCTTGGCGGATTACAATATCCAGAAGGAATCTACGCTTCACTTGGTGTTG 4408
Query 29175 CG 29176
||
Sbjct 4409 CG 4410
>seq8442
Length=60656
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||||||| | | |||||| | || || ||||| |||||| ||| || | |
Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | ||| | ||| || || ||||| ||||| | || ||| |
Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138
||| || || ||||| || || |||||||| || || || || || ||| ||||||
Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCT-TGGA-GATTAC 43855
Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||||||||||| ||||| || ||||| |||| || |||| ||
Sbjct 43854 AATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 43805
>seq7697
Length=17472
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| |||||| | || || | || || |||||||||||| || ||| | ||
Sbjct 10191 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 10132
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | ||| || || || || ||||| | || |||||
Sbjct 10131 GACACAATAGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 10072
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| ||||||||||| || || || ||||| |||||| | ||| | || ||||||||
Sbjct 10071 CAGAGACTTATCTTCGCAGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 10012
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170
|| ||||||||||| |||||||| ||||
Sbjct 10011 ATCCAGAAGGAATCGACTCTTCATTTGGT 9983
>seq5576
Length=16168
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | ||||| | || ||||||||||| || ||| ||| | ||
Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | | | ||| || ||| ||||||||||| | || || |||
Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| || ||||| || || ||| | ||| | || |||||||||
Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAAT 1074
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
|| || |||||||| || ||||||
Sbjct 1073 ATCCAAAAGGAATCAACACTTCAC 1050
>seq12325
Length=88458
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||||| || || ||| ||||||||||| |||||||| || ||||| || |||
Sbjct 4183 GAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAA 4242
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | ||| | || |||||||| || || | |||||| ||||| ||| |||| |
Sbjct 4243 GATGGCTGTACTTTAGCTGATTACAACATCCAAATGGAATCAACTCTCCACTTGGTTCTC 4302
Query 29175 CGATTACGAGGA 29186
| ||| |||||
Sbjct 4303 AGGTTAAGAGGA 4314
>seq25505
Length=75187
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
||||||||| ||| | |||||||| || |||||||| |||||| | ||| | || ||
Sbjct 56621 AGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGCCGAACACTAGCGGA 56680
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
|||||||||||||| || || |||||||| |||| ||
Sbjct 56681 CTACAATATTCAGAAAGAGTCGACTCTTCATTTGGTCTT 56719
>seq14351
Length=15190
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||| | || || |||| ||| | ||||| |||||||||||| ||| || | ||
Sbjct 4392 ATGTAGATCTTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 4451
Query 29022 GAGACGGTGGCCGATCTTAA-GCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || |||| || ||| || || || ||||| | || || ||
Sbjct 4452 GACACCATTGACAATGTTAAAGCTAAA--TTCAAGACAAGGAAGGGATCCCTCCGGACCA 4509
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||| || || |||||| | || |||||||| || ||| |||| | || ||||| ||
Sbjct 4510 ACAGAGGCTCATCTTT-CTGGAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAA 4568
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
|||||||||||||| ||||||||| | ||| | || | || || |||
Sbjct 4569 CATTCAGAAGGAATCAACTCTTCACCTTGTGCTGAGACTCCGTGGTGGG 4617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428185784572625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |