Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq24711 95.1 1e-14 seq8442 89.7 4e-13 seq7697 89.7 4e-13 seq5576 89.7 4e-13 seq12325 86.0 5e-12 seq25505 84.2 2e-11 seq14351 84.2 2e-11 >seq24711 Length=27656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||||||||| || ||||| ||| ||| | | Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || ||||| ||| | || || || Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| || || || || ||||| || |||| |||| |||||||| Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||||||||| ||||||| || |||| || || Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 4878 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||||| || ||| | ||||| || || || ||| ||||| Sbjct 4289 GATAAGGAAGGTATTCCTCCGGATCAGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAA 4348 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct 4349 GACGGACGTACCTTGGCGGATTACAATATCCAGAAGGAATCTACGCTTCACTTGGTGTTG 4408 Query 29175 CG 29176 || Sbjct 4409 CG 4410 >seq8442 Length=60656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||| | | |||||| | || || ||||| |||||| ||| || | | Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | ||| | ||| || || ||||| ||||| | || ||| | Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| || || ||||| || || |||||||| || || || || || ||| |||||| Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCT-TGGA-GATTAC 43855 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| ||||| || ||||| |||| || |||| || Sbjct 43854 AATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 43805 >seq7697 Length=17472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | || || | || || |||||||||||| || ||| | || Sbjct 10191 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 10132 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || || || || ||||| | || ||||| Sbjct 10131 GACACAATAGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 10072 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || || || ||||| |||||| | ||| | || |||||||| Sbjct 10071 CAGAGACTTATCTTCGCAGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 10012 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| |||||||| |||| Sbjct 10011 ATCCAGAAGGAATCGACTCTTCATTTGGT 9983 >seq5576 Length=16168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||||||||| || ||| ||| | || Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || ||| ||||||||||| | || || ||| Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || || ||| | ||| | || ||||||||| Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAAT 1074 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || || |||||||| || |||||| Sbjct 1073 ATCCAAAAGGAATCAACACTTCAC 1050 >seq12325 Length=88458 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||| || || ||| ||||||||||| |||||||| || ||||| || ||| Sbjct 4183 GAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAA 4242 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | || |||||||| || || | |||||| ||||| ||| |||| | Sbjct 4243 GATGGCTGTACTTTAGCTGATTACAACATCCAAATGGAATCAACTCTCCACTTGGTTCTC 4302 Query 29175 CGATTACGAGGA 29186 | ||| ||||| Sbjct 4303 AGGTTAAGAGGA 4314 >seq25505 Length=75187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||| ||| | |||||||| || |||||||| |||||| | ||| | || || Sbjct 56621 AGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAAGATGGCCGAACACTAGCGGA 56680 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||||||||| || || |||||||| |||| || Sbjct 56681 CTACAATATTCAGAAAGAGTCGACTCTTCATTTGGTCTT 56719 >seq14351 Length=15190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||| | || || |||| ||| | ||||| |||||||||||| ||| || | || Sbjct 4392 ATGTAGATCTTTGTCAAGACACTCACGGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 4451 Query 29022 GAGACGGTGGCCGATCTTAA-GCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || |||| || ||| || || || ||||| | || || || Sbjct 4452 GACACCATTGACAATGTTAAAGCTAAA--TTCAAGACAAGGAAGGGATCCCTCCGGACCA 4509 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || || |||||| | || |||||||| || ||| |||| | || ||||| || Sbjct 4510 ACAGAGGCTCATCTTT-CTGGAAAACAACTTGAGGATGGTCGAACTCTTGCTGATTATAA 4568 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||||| ||||||||| | ||| | || | || || ||| Sbjct 4569 CATTCAGAAGGAATCAACTCTTCACCTTGTGCTGAGACTCCGTGGTGGG 4617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428185784572625