Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq5576 93.3 3e-14
seq24711 86.0 5e-12
seq12325 86.0 5e-12
seq8442 86.0 5e-12
>seq5576
Length=16168
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || | ||||| | || ||||||||||| || ||| ||| | ||
Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||||| || ||| ||||||||||| | || || |||
Sbjct 1193 GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAA 1134
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| || ||||||||||| || ||||| | || ||| | ||| | || |||||||||
Sbjct 1133 CAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAAT 1074
Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238
|| ||||||||||| || ||||||
Sbjct 1073 ATCCAAAAGGAATCAACACTTCAC 1050
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || | ||||| || || ||||||||||||||| ||| || | ||
Sbjct 1025 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAAACCATTACCTTAGAAGTTGAGAGCTCA 966
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | ||||| || ||| || || ||||| | | || |||
Sbjct 965 GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCACTCCGGACCAA 906
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||||| ||||| || || ||||| | || ||| ||| | || |||||||||
Sbjct 905 CAGAGACTGATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACTCTTGCGGATTACAAT 846
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262
|| |||||||| ||||| |||||| | ||| |||| | || || |||
Sbjct 845 ATCCAAAAGGAGTCTACACTTCACCTTGTGCTACGTCTTCGTGGTGGG 798
>seq24711
Length=27656
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| |||||| | || ||||| || ||| | ||||| || || || |||||||||
Sbjct 4289 GATAAGGAAGGTATTCCTCCGGATCAGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAA 4348
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
|| || |||| ||||||||||| || ||||||||||| |||||| |||||||
Sbjct 4349 GACGGACGTACCTTGGCGGATTACAATATCCAGAAGGAATCTACGCTTCACTTGGTGTTG 4408
Query 25248 CG 25249
||
Sbjct 4409 CG 4410
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || || | || || ||||||||||| || ||||| ||| ||| | |
Sbjct 4652 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACTATTACTTTGGAAGTTGAAAGCTCC 4711
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| || ||| || ||||| ||| | || || ||
Sbjct 4712 GACACTATTGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACCAG 4771
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||| | |||||||| || || || | ||||| || |||| |||| ||||||||
Sbjct 4772 CAGAGATTGATCTTTGCTGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 4831
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| || || || ||||||||||| ||||||| || |||| || ||
Sbjct 4832 ATCCAGAAAGAGTCTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 4878
>seq12325
Length=88458
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| ||||||| || || ||| ||||||||||| |||||||| || ||||| | |||
Sbjct 4183 GAGAAAGAAGAAGTCCCTTCAGACCAACAAAGACTGATCTTTGCCGGTAAACAGCTCGAA 4242
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
||| | ||| | || |||||||| || |||| |||||| ||||| ||| |||| |
Sbjct 4243 GATGGCTGTACTTTAGCTGATTACAACATCCAAATGGAATCAACTCTCCACTTGGTTCTC 4302
Query 25248 CGATTACGAGGA 25259
| ||| |||||
Sbjct 4303 AGGTTAAGAGGA 4314
>seq8442
Length=60656
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
|||||||||| | | |||||| | || || ||||| |||||| ||| || | |
Sbjct 44032 AATGCAAATAGTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 43973
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| || | | ||| ||||| || || ||||| ||||| | || ||| |
Sbjct 43972 AGACACCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 43913
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211
||| || || ||||| || || |||||| | || || || || || ||| ||||||
Sbjct 43912 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGACGGTCGAACCCT-TGGA-GATTAC 43855
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||| |||||||| ||||| || ||||| |||| || |||| ||
Sbjct 43854 AATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 43805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410652735487850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |