Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18065 140 5e-28 seq18044 134 2e-26 seq4225 127 3e-24 seq5576 125 1e-23 seq7697 118 2e-21 seq14351 113 7e-20 seq25811 109 8e-19 seq2313 107 3e-18 seq24711 104 4e-17 seq8442 95.1 2e-14 seq2366 95.1 2e-14 seq16226 89.7 8e-13 >seq18065 Length=21122 Score = 140 bits (154), Expect = 5e-28 Identities = 176/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || ||||| || || |||| |||| ||| | Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 | | || ||| ||| | || | | ||||||||||||||||| || || || || || Sbjct 12467 T-ACACCATTGACAATGTTAAGGCGGAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 12525 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| ||||| || ||||| | |||||| |||| || |||| |||||||| Sbjct 12526 GCAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTTAGCGGATTATAA 12585 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| |||||||||||| | |||||||| | ||| | ||||||| || ||| || Sbjct 12586 CATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGAATGCAAATTT 12644 Score = 113 bits (124), Expect = 7e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||| | || || || ||||| || || |||| |||| || | Sbjct 14880 ATGCAGATATTTGTCAAGCCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGGTCA 14939 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| ||| ||||||||||||||||| || || || || || Sbjct 14940 -GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCA 14998 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| || |||||| | |||||| ||||||| || | ||||| || Sbjct 14999 GCAGAGATTAATCTTTGCCGGTAAACAACTTGAGGATGGTCGAACCTTTGCGGATTACAA 15058 Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741 | ||||| || |||||| |||| Sbjct 15059 CACCCAAAAGGAGTCAACTCTGCA 15082 >seq18044 Length=6213 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || ||||| || || |||| | || ||| | Sbjct 3304 ATGCAGATATTTGTCAAGACTCTTACTGGTAAAACAATTACCCTAGAAGTCGAGAGCTCA 3245 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| ||||||||||| || ||||| || || || || || Sbjct 3244 -GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCA 3186 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| | |||||| ||||||| | | |||||| || Sbjct 3185 GCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGATGGTCGAACCCTTGCAGATTACAA 3126 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || |||||||| ||||||||||| | | || |||||||||| Sbjct 3125 CATTCAGAAGGAATCAACCCTGCATTTGGTTCTCAGGTTGAGAGGTGGTAT 3075 >seq4225 Length=52512 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || || || ||||| ||||| ||||| | Sbjct 2962 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTC 2903 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||| |||||||| || ||||| || ||||| || || Sbjct 2902 GGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACCA 2843 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || ||||||||||| || | ||||| | | ||||| || Sbjct 2842 GCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACAA 2783 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || ||||||||||| | ||||||||| |||| ||| |||| || Sbjct 2782 CATCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGG 2735 >seq5576 Length=16168 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | || || ||||| |||||||| ||||| | ||| | ||| || | Sbjct 1253 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 1194 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || ||||||||||||||||| || || || || || Sbjct 1193 -GACACCATTGACAACGTCAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCA 1135 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| ||||| || ||||| |||||||| | || || | | ||||| || Sbjct 1134 ACAGAGGCTTATCTTTGCCGGTAAACAGCTAGAGGATGGCCGTACTCTTGCGGATTACAA 1075 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| |||||||| | || | ||| | ||| | || ||||| || Sbjct 1074 TATCCAAAAGGAATCAACACTTCACCTTGTTCTTCGTCTTCGTGGTGGGAT 1024 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| |||||||| || || || || |||||||||||||| ||||| || ||| Sbjct 1397 AAGATCCAAGACAAAGAAGGAATCCCTCCGGACCAACAAAGGCTTATCTTTGCCGGTAAA 1338 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || || | ||||| || || ||||| || |||||| | || Sbjct 1337 CAGCTCGAGGACGGCCGTACCTTGGCTGATTACAACATCCAAAAGGAGTCAACTCTCCAC 1278 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||||| |||| ||||| Sbjct 1277 TTGGTTCTGCGTTTGAGAGGAGGTAT 1252 >seq7697 Length=17472 Score = 118 bits (130), Expect = 2e-21 Identities = 170/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-A 124592 |||| ||||||||||| | || ||||| || || || || |||||| | ||| | || | Sbjct 11336 TACAGATGCAAATATTCGTGAAAACACTTACTGGAAAGACCATAACTCTCGAGGTCGAGA 11277 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || ||| || || |||| | || || || || || || |||||||| || || Sbjct 11276 GC-TCTGACACTATCGATAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCG 11218 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||| ||||| | || || || || ||||| |||| ||| | || || || | ||| Sbjct 11217 GATCAGCAAAGATTGATCTTCGCTGGTAAACAGCTAGAAGATGGCCGTACTTTGGCAGAC 11158 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || |||||||| ||||| |||||| | || || |||||||||| Sbjct 11157 TACAATATCCAGAAGGAATCAACCTTGCACTTGGTTCTCCGATTGAGAGGTGGTAT 11102 >seq14351 Length=15190 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| || |||||||| || |||||| | ||| | ||| Sbjct 3936 ATGCAAATCTTTGTAAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGCTCC 3995 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| | | | || || ||||||||||||||||| || || || || || Sbjct 3996 GACACAATTGACAGTGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCGGACCAG 4055 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || ||||| | |||||| | || || | | ||||| || Sbjct 4056 CAGAGGTTGATCTTTGCCGGTAAACAGCTCGAGGATGGCCGTACTCTTGCTGATTACAAC 4115 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | |||||||||| Sbjct 4116 ATCCAGAAGGAGTCAACACTCCACTTGGTCCTTCGTCTCAGAGGTGGTAT 4165 >seq25811 Length=7539 Score = 109 bits (120), Expect = 8e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 |||||| ||||||||||| || |||||||| || ||||| | || | ||| || Sbjct 253 GCAAATCTTTATAAAGACTCTTACAGGCAAGACCATAACCCTTAAGGTCGAAAGTTCAGA 312 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 || ||| ||| | || || || |||||||| ||||| || || || || || || Sbjct 313 CACTATTGACAATGTCAAGGCAAAGATCCAAGATAAGGAAGGAATCCCTCCGGACCAGCA 372 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 ||||| || ||||| || |||||||| |||||| || | || | | || || || || Sbjct 373 GAGGCTGATCTTTGCGGGTAAACAATTGGAGGATGGTTGTACTCTTGCGGACTACAACAT 432 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| ||||| |||||| | || | ||| | ||| | || ||||| Sbjct 433 TCAGAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 477 >seq2313 Length=70781 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || |||||||||||||||||||||||||| ||||| |||||||| || || ||| | Sbjct 4829 CAGGACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTT 4770 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| |||| ||||| || || || ||||| || ||| | ||| | || Sbjct 4769 GAAGATGGTCGAACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTC 4710 Query 124749 TT 124750 || Sbjct 4709 TT 4708 >seq24711 Length=27656 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || |||||||| ||| | ||| | || | Sbjct 4424 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACTATTACTCTTGAGGTGGAGAGTTCT 4483 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||||||||| |||||||| || || ||||| Sbjct 4484 GATACCATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCTCCGGATCAG 4543 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || ||||| ||| | |||||| |||| || | | ||||| ||| Sbjct 4544 CAGAGGTTGATTTTCGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCGGATTACAAT 4603 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | ||| | || | | | || |||||||| Sbjct 4604 ATCCAGAAGGAGTCTACTCTTCATCTTGTGCTCAGGCTTCGTGGTGGTAT 4653 >seq8442 Length=60656 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || |||||||| || ||||| | || | ||| Sbjct 44259 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAGACCATAACCCTTGAAGTCGAAAGCTCC 44200 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || || |||||||||||||| || | || || | Sbjct 44199 GACACAATTGACAATATCAAGACCAAGATCCAAGATAAAGAAGGAATTTCTCCGGACGAG 44140 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| | ||||| |||| || | | ||||| || Sbjct 44139 CAGAGGCTCATCTTTGCCGGTAAACAGCTCGAGGACGGTCGTACTCTTGCGGATTACAAC 44080 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || |||||| | || | || | |||||||| ||||| || Sbjct 44079 ATCCAGAAGGAGTCAACTCTACACCTTGTCCTTCGTTTACGCGGTGGAAT 44030 >seq2366 Length=14026 Score = 95.1 bits (104), Expect = 2e-14 Identities = 174/249 (70%), Gaps = 11/249 (4%) Strand=Plus/Plus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| |||||||||||||| | ||||||||| ||||| | |||||||||||||||| | Sbjct 9591 GCAATGTTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAA 9650 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAA-TGACAAGGTGGTATAACCAT 205601 || | | ||| | |||| ||| ||| ||||||| || || || || | |||| Sbjct 9651 AGTTCTCCATTCGCA---ACATAAAACTGT-GAAAACAAGTGGCATGGAGGAAGGGCCAT 9706 Query 205602 ATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttt 205658 || || ||| ||||||||| || | | |||||| | | | ||| ||||| || Sbjct 9707 CAGTTTAAGATCAGGAGGATTCCAAGCCG---ACATTATAATCCGTCGATCATCAGGATT 9763 Query 205659 attttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGT 205718 || || || || || | | || | | |||||||||||||| ||||||| | Sbjct 9764 GTTCTTGATCTTGTTAACTACATCTAAAAGCTGATCAAATCCTTGGCCAGTATAATCAGC 9823 Query 205719 ATCCATATC 205727 || |||||| Sbjct 9824 ATGCATATC 9832 >seq16226 Length=39664 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| | || || || || || || | ||| |||| ||| | Sbjct 11364 ATGCAAATCTTCGTGAAGACCTTGACTGGTAAGACCATTACCCTTGAGGTTGAGAGCTCA 11305 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || || || ||||||||||| || || || || Sbjct 11304 -GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCA 11246 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || |||||||| ||||| || | |||||| |||| || |||| || || || Sbjct 11245 GCAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCTTAGCCGACTACAA 11186 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || ||||| || ||| | || |||||||| Sbjct 11185 CATTCAGAAGGAGTCGACCCTTCACTTGGTCTTGCGTCTTCGTGGTGGTAT 11135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755184271920000