Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq24711 104 3e-17 seq4225 100 4e-16 seq7697 98.7 1e-15 seq16226 95.1 2e-14 seq18065 93.3 6e-14 seq14351 89.7 8e-13 seq13281 89.7 8e-13 >seq24711 Length=27656 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | || | ||| | |||||| || || ||||| ||||| | | Sbjct 4650 CCACCACGAAGCCTGAGCACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCA 4591 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| |||||||| |||||||| || ||||||||||||||| Sbjct 4590 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGA 4531 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 4530 ATACCTTCCTTATCTTG 4514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||||||| | |||||| ||||| || || ||||| | | |||||||| || Sbjct 4863 AACACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 4804 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | || || |||||||| |||||||| ||||| ||||||||||| || ||||| ||| Sbjct 4803 TCAAGCTGCTTACCAGCAAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 4744 Query 146186 TG 146187 || Sbjct 4743 TG 4742 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || ||||| || | |||||||| || ||||| ||||| | Sbjct 4422 CCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCC 4363 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | || || ||||| || ||||| || |||||||| ||||||||||||||| Sbjct 4362 AAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 4303 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 4302 ATACCTTCCTTATCCTG 4286 >seq4225 Length=52512 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || || |||||||| | || |||||||| || || ||||| | Sbjct 2734 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGC 2793 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | || ||||||||||| || ||||| ||||| | |||||| ||||| || Sbjct 2794 GAGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGG 2853 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 2854 AATTCCTTCCTTGTCTTG 2871 >seq7697 Length=17472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || || || ||||| || ||||| || |||| Sbjct 11105 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTTGATTCCTTCTGGATATTGTAGTCTGCC 11164 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| |||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 11165 AAAGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 11224 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 11225 ATACCTTCCTTGTCCTG 11241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | |||||||| | ||| ||||| || || || ||||| | Sbjct 9963 TTCCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCG 10022 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||| || | ||| || | ||| || || || || || | ||| ||||||||||||| Sbjct 10023 CAAGAGTCCTTCCATCTTCAAGTTGCTTACCTGCGAAGATAAGTCTCTGCTGATCCGGAG 10082 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || || || Sbjct 10083 GAATCCCTTCCTTGTCCTG 10101 >seq16226 Length=39664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | |||||| | || | ||| | ||||| || || || || ||||| | | Sbjct 12050 CCTCCACGAAGTCTGAGGACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCA 12109 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| |||||||| |||||||| || ||||||||||||||| Sbjct 12110 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGATCCGGAGGA 12169 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 12170 ATTCCCTCCTTATCTTG 12186 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||| || || || ||||| ||||| | Sbjct 12278 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 12337 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || ||||| |||||||| || |||||||| ||||||||||||||| Sbjct 12338 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 12397 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 12398 ATTCCTTCCTTATCCTG 12414 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || ||||| || | ||| || ||||| ||||| || || | Sbjct 11822 CCACCACGAAGACGCAACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCC 11881 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || | ||| ||||| || || |||||||| ||||| ||||||||| Sbjct 11882 AGAGTTCTACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 11941 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| || || Sbjct 11942 ATACCCTCTTTGTCCTG 11958 >seq18065 Length=21122 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTT-AGATATATTATAATCT 146107 |||||||||| || | | |||||||| | || |||||||| ||| || |||||||| Sbjct 12635 TTCCACCTCTCAGACGAAGCACCAAATGAAGGGTTGATTCTTTTAGA-ATGTTATAATCC 12577 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||| | | ||| || | ||||| || ||||| || | ||| ||||| |||||| Sbjct 12576 GCTAAAGTCCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGA 12517 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||||||||| Sbjct 12516 GGGATCCCTTCTTTATCTTG 12497 >seq14351 Length=15190 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||||| || | || || || || || || ||||| | | Sbjct 4162 CCACCTCTGAGACGAAGGACCAAGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCA 4103 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | ||||| || ||||| ||||| || ||||| |||||||| Sbjct 4102 AGAGTACGGCCATCCTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGGTCCGGAGGG 4043 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 4042 ATTCCTTCTTTATCTTG 4026 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | |||||||| | ||| || || || || || ||||| | Sbjct 4390 CCTCCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGCT 4331 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | || || |||||||| ||||| |||||||| ||||||||| Sbjct 4330 AGAGTACGACCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTTTGCTGGTCCGGAGGA 4271 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 4270 ATTCCTTCCTTATCTTG 4254 >seq13281 Length=64742 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 10431 CCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATT 10490 ||| ||||| || || ||| | || || ||||||| ||| || || | | || Sbjct 23955 CCTGAAGGAACATACGCGAGAATCGCACCGAGATCTGGTTTGGCATGGAAACACTCGATC 23896 Query 10491 GATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTT 10550 ||| | ||||||||||||||||| | |||||||||||| ||| || || || || || Sbjct 23895 GATGTAGGAGCTGGAGTAATTGATGCTGATTATAGAGGACCTGTTGGTGTGATTTTGTTC 23836 Query 10551 AATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAAT 10594 ||||||||| ||| |||||| | | || ||||||| |||| Sbjct 23835 AATCATTCTGATGTTGATTTTGAAGTCAAGTTAGGAGATCGAAT 23792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743258962848000