Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq24711 91.5 1e-13 seq18065 86.0 4e-12 seq16226 82.4 5e-11 >seq24711 Length=27656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| ||| ||||| || ||||| || | | Sbjct 4422 CCACCACGAAGACGCAACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCC 4363 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| ||||| ||||| || ||||| || | | |||||| || || Sbjct 4362 AAGGTACGTCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 4303 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| |||||| | | | |||| ||| | ||| || Sbjct 4302 ATACCTTCCTTATCCTGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCAC 4244 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || |||||||||||||||||||||||||||||| Sbjct 4243 CTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 4195 >seq18065 Length=21122 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||| || |||| || | ||| || ||||| ||||||||||| | Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG-- 34280 || |||| | || || | || || || || || ||||||| ||| || || ||| Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATC--CGGAT 12288 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | |||||||| |||||| ||||| || | |||| | |||| ||| | Sbjct 12287 GGATTCCTTCCTTGTCTTGAATCTTTGCCTTTACATTGTCTATTGTGTCGGAGCTTTCAA 12228 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| | || ||||| ||||| || ||||| || |||||||| |||||| Sbjct 12227 CGTCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCATC 12178 >seq16226 Length=39664 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | ||| || ||||| || ||||| || | | Sbjct 12278 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 12337 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || ||||| ||||| || ||||| || | | |||||| || || Sbjct 12338 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 12397 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | |||| || | ||| || Sbjct 12398 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATCGTGTCAGAACTTTCCACC 12457 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || |||||||||||||||||||||||||||||| Sbjct 12458 TCGAGGGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 12505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322958700164000