Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq18099 237 1e-57 >seq18099 Length=159039 Score = 237 bits (262), Expect = 1e-57 Identities = 597/893 (67%), Gaps = 27/893 (3%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| |||| ||||||||| ||||| ||||| || || |||| Sbjct 20956 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTG 20897 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCC 16050 ||| || ||||| ||||||| ||||| | || ||| |||| | | || Sbjct 20896 TAAACTTATCAACTCCATCCAATCAAACGGATTACTCACACCATACACTTTACCATA-CC 20838 Query 16051 CAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||| || | || || |||||||| ||||| || |||||||| |||| || |||| | Sbjct 20837 CAAGCGCACCTAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGAT 20778 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || | || | ||| | || || || ||| | | | || || | ||||| Sbjct 20777 TCATCCCAACCAACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCG 20718 Query 16170 CTTCA------AT-GATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 | ||| || || | | ||||| | ||||| || | | ||| | | || Sbjct 20717 CATCACACACAATCGACTTCA-CTCTTTCCTCACTAAGCTTCGTACG---TAACA-GAGT 20663 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 |||| | | |||||| |||||||| || | |||||||| || ||||||||||| Sbjct 20662 ATAAA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTA 20605 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | ||| ||||| ||||| ||||| |||| ||| || || | || ||| Sbjct 20604 GAGAAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAA 20545 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| ||||||||||||||||| || || || || | || ||| || | ||| | Sbjct 20544 CCAGAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGA 20485 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | | || ||||| | ||||||| | ||||| | ||||||| || | Sbjct 20484 GAT---CCATCGATCCAAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTT 20428 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || |||||| ||||||| || | |||||||| ||||| || || || || | || Sbjct 20427 TCGATTGCACGGAATAAATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGA 20368 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | | |||||| |||||||| |||||||| || || || || || || || || ||| | Sbjct 20367 AGAGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CG 20309 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 |||||||| | |||||| || || || | | || | ||||||| || ||||| Sbjct 20308 CGCTTCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCC 20249 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGA 16698 || || || || || || |||| |||||| || || | || | ||| | || Sbjct 20248 GTCAGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG- 20191 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || ||| ||||||| |||| ||| | |||||| ||||| | ||||| || || Sbjct 20190 -AGATTTTCCCAGTCACGGTTGTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 20132 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || | || || || ||||||| ||| || | | ||| ||| ||||||| Sbjct 20131 TGCTTCGGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATCGGAAACA 20079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462345640215000