Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq16226 113 4e-20 seq18044 109 4e-19 seq18065 104 2e-17 seq24711 98.7 8e-16 seq8442 96.9 3e-15 seq5576 89.7 4e-13 >seq16226 Length=39664 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||| ||||||||| ||||||||||| || |||| | || Sbjct 11381 AACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCT 11440 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| ||||| ||||||| || ||||| || || | ||||||||||| Sbjct 11441 TCAAGCTGCTTTCCAGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 11500 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | | |||| | ||||||||| | |||||| ||| Sbjct 11501 TGGATTTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGTC 11560 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || | ||||| |||||||| ||||| Sbjct 11561 TTACCAGTTAAGGTCTTGACAAAGATCTGCAT 11592 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || |||| | || || Sbjct 10928 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 10987 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 10988 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 11047 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||| ||||| | |||||| ||||| Sbjct 11048 ATCTTGGCCTTGACATTGTCAATTGTGTCCGAGCTCTCAACCTCAAGGGTAATGGTCTTT 11107 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || || ||||| Sbjct 11108 CCGGTGAGAGTCTTCACGAAAATCTGCAT 11136 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||| ||| ||||| || |||||||| ||| | | |||| Sbjct 11837 AACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCCAGAGTTCTACCGTCT 11896 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| ||||||||||| ||||| | ||| ||||| ||||| | |||||| |||||| Sbjct 11897 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCC 11956 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| | || || |||| ||| || ||| Sbjct 11957 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGATGGTC 12016 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| ||||| ||||| || ||||| Sbjct 12017 TTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| ||||||||||| || ||| | || Sbjct 11609 AACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGACCATCC 11668 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || ||||||| ||| ||||| ||||| | |||||| ||||| Sbjct 11669 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 11728 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || | || |||| || | | | | |||| | ||| ||||| | ||||| || Sbjct 11729 TGAA-TCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGAGTAATGGT 11787 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| |||||||| ||||| ||||| Sbjct 11788 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 11820 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| || ||||| || || || | || ||| Sbjct 12296 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCATCTTCC 12355 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||| ||||| ||||| | ||| || || ||||| | || ||||| ||| Sbjct 12356 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGG 12415 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | || | |||| || |||||||| | ||| || ||||| Sbjct 12416 ATCTTAGCCTTAAC-GTTGTCAATCGTGTCAGAACTTTCCACCTCGAGGGTGATTGTCTT 12474 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||||||||| ||||| Sbjct 12475 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 12504 >seq18044 Length=6213 Score = 109 bits (120), Expect = 4e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| || | ||||| ||||| || ||||||||||||||||| || | | Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATC-TGC 3136 Query 45170 A---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | ||| ||| | || || || ||||| ||||| || |||| || ||| ||||| ||| Sbjct 3137 AAGGGTT--CGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGA 3194 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || |||||||| |||||| ||||| | | | |||| | ||| Sbjct 3195 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCG 3254 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | |||||| || || || || |||||||| ||||| || ||||| Sbjct 3255 ACTTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304 >seq18065 Length=21122 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| || | ||||| || || || ||||||||| ||||||||||| Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || |||||||||||||| || || | || |||||| || ||| | Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATGG 12286 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| ||| ||| || | | |||| | || || Sbjct 12285 ATTCCTTCCTTGTCTTGAATCTTTGCCTTTACATTGTCTATTGTGTCGGAGCTTTCAACG 12226 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || |||||||| |||||||||||||| Sbjct 12225 TCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179 >seq24711 Length=27656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || |||||| || || |||||||| || ||| | || Sbjct 5091 AACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACCATCC 5032 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||||| ||| ||||| || || | ||| ||||| || Sbjct 5031 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTTATCT 4972 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | |||| || ||||||||| | |||||| ||| Sbjct 4971 TGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAACTCTCCACCTCGAGGGTAATGGTC 4912 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| || ||||||||||| Sbjct 4911 TTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| | || || ||||| ||||| ||||| Sbjct 4615 CTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCGAA 4556 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || ||||| | ||| ||||| || ||| || |||||| Sbjct 4555 AATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATT 4496 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || || ||||||||| | ||||| || || || |||| |||||||| Sbjct 4495 GTCAATGGTATCAGAACTCTCCACCTCAAGAGTAATAGTTTTACCAGTCAAGGTCTTCAC 4436 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 4435 AAAGATCTGCAT 4424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||| |||||||| || ||||| || || || |||| Sbjct 4407 AACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCGTCT 4348 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || ||||| ||||| | ||| || || ||||| | ||| ||||| ||| Sbjct 4347 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 4288 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||| || |||| | || | | | | || || |||||||| | || || || Sbjct 4287 TGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGT 4229 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| ||||||||||| ||||| Sbjct 4228 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196 >seq8442 Length=60656 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | || ||||| ||||| || ||||||||||| ||||| || | | Sbjct 43805 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATC-TCC 43863 Query 45170 A---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 | ||| ||| |||| || |||||||| || ||||| || | || ||||| ||| ||| Sbjct 43864 AAGGGTT--CGACCGTCCTCGAGTTGTTTACCAGCGAAGATGAGCCTCTGTTCGTCTGGA 43921 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || ||||| || || || ||| || | | | | |||| | ||| Sbjct 43922 GGGATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGGTGTCTGAGCTCTCA 43981 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | |||||| || || || || || || ||||||| |||||||| Sbjct 43982 ACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAACTATTTGCAT 44031 >seq5576 Length=16168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | |||||||| || || |||||| || |||||||| || | Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| || || ||||| ||||| || || | || |||||||| ||||| Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| || || ||| || | ||| |||| | || ||| Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||||||||| ||||| ||||| ||||||||||| Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394936648979275