Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq16226 113 4e-20
seq18044 109 4e-19
seq18065 104 2e-17
seq24711 98.7 8e-16
seq8442 96.9 3e-15
seq5576 89.7 4e-13
>seq16226
Length=39664
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || ||| ||||||||| ||||||||||| || |||| | ||
Sbjct 11381 AACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCT 11440
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || ||||| ||||| ||||||| || ||||| || || | |||||||||||
Sbjct 11441 TCAAGCTGCTTTCCAGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 11500
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
||||| ||| || | | | |||| | ||||||||| | |||||| |||
Sbjct 11501 TGGATTTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTAATAGTC 11560
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || | ||||| |||||||| |||||
Sbjct 11561 TTACCAGTTAAGGTCTTGACAAAGATCTGCAT 11592
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| ||||||||||| || |||| | || ||
Sbjct 10928 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCA 10987
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| || | ||||| ||||| ||||| | ||| |||||||||
Sbjct 10988 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGG 11047
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| | ||| ||||| | |||||| |||||
Sbjct 11048 ATCTTGGCCTTGACATTGTCAATTGTGTCCGAGCTCTCAACCTCAAGGGTAATGGTCTTT 11107
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||||||||| || || |||||
Sbjct 11108 CCGGTGAGAGTCTTCACGAAAATCTGCAT 11136
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || ||| ||| ||||| || |||||||| ||| | | ||||
Sbjct 11837 AACACCAAGTGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGCCAGAGTTCTACCGTCT 11896
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| ||||| ||||||||||| ||||| | ||| ||||| ||||| | |||||| ||||||
Sbjct 11897 TCAAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCC 11956
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| || ||| || | | | |||| | || || |||| ||| || |||
Sbjct 11957 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGATGGTC 12016
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| |||| ||||| ||||| || |||||
Sbjct 12017 TTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 12048
Score = 102 bits (112), Expect = 6e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| || || ||||||||| ||||||||||| || ||| | ||
Sbjct 11609 AACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGACCATCC 11668
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || || ||||| || ||||||| ||| ||||| ||||| | |||||| |||||
Sbjct 11669 TCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 11728
Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
|| | || |||| || | | | | |||| | ||| ||||| | ||||| ||
Sbjct 11729 TGAA-TCTTGGCTTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCGAGAGTAATGGT 11787
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || |||| |||||||| ||||| |||||
Sbjct 11788 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 11820
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| || ||||| || || || | || |||
Sbjct 12296 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCATCTTCC 12355
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| ||| ||||| ||||| ||||| | ||| || || ||||| | || ||||| |||
Sbjct 12356 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGG 12415
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| || |||||| | | || | |||| || |||||||| | ||| || |||||
Sbjct 12416 ATCTTAGCCTTAAC-GTTGTCAATCGTGTCAGAACTTTCCACCTCGAGGGTGATTGTCTT 12474
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||| ||||||||||| |||||
Sbjct 12475 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 12504
>seq18044
Length=6213
Score = 109 bits (120), Expect = 4e-19
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||| || | ||||| ||||| || ||||||||||||||||| || | |
Sbjct 3078 CCACCTCTCAACCTGAGAACCAAATGCAGGGTTGATTCCTTCTGAATGTTGTAATC-TGC 3136
Query 45170 A---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
| ||| ||| | || || || ||||| ||||| || |||| || ||| ||||| |||
Sbjct 3137 AAGGGTT--CGACCATCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGA 3194
Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286
|| | || |||||||| |||||| ||||| | | | |||| | |||
Sbjct 3195 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCG 3254
Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || | |||||| || || || || |||||||| ||||| || |||||
Sbjct 3255 ACTTCTAGGGTAATTGTTTTACCAGTAAGAGTCTTGACAAATATCTGCAT 3304
>seq18065
Length=21122
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||| || | ||||| || || || ||||||||| |||||||||||
Sbjct 12405 CCACCTCTCAACCTGAGAACCAAATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 12346
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| || | || || |||||||||||||| || || | || |||||| || ||| |
Sbjct 12345 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGCCTCTGTTGATCCGGATGG 12286
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| ||| ||| ||| || | | |||| | || ||
Sbjct 12285 ATTCCTTCCTTGTCTTGAATCTTTGCCTTTACATTGTCTATTGTGTCGGAGCTTTCAACG 12226
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | || || |||||||| || |||||||| ||||||||||||||
Sbjct 12225 TCAAGTGTTATGGTCTTGCCTGTAAGAGTCTTTACAAAGATTTGCAT 12179
>seq24711
Length=27656
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||||| || |||||| || || |||||||| || ||| | ||
Sbjct 5091 AACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACCATCC 5032
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || |||||||| || ||||||| ||| ||||| || || | ||| ||||| ||
Sbjct 5031 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTTATCT 4972
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304
|| ||| ||| || | | |||| || ||||||||| | |||||| |||
Sbjct 4971 TGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAACTCTCCACCTCGAGGGTAATGGTC 4912
Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||| ||||| || |||||||||||
Sbjct 4911 TTACCAGTCAAGGTCTTAACGAAGATTTGCAT 4880
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| || ||||| || || ||| | || || ||||| ||||| |||||
Sbjct 4615 CTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCGAA 4556
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| || || ||||| | ||| ||||| || ||| || ||||||
Sbjct 4555 AATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATT 4496
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | || || ||||||||| | ||||| || || || |||| ||||||||
Sbjct 4495 GTCAATGGTATCAGAACTCTCCACCTCAAGAGTAATAGTTTTACCAGTCAAGGTCTTCAC 4436
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 4435 AAAGATCTGCAT 4424
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| ||||| |||||||| || ||||| || || || ||||
Sbjct 4407 AACACCAAGTGAAGCGTAGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGTCCGTCT 4348
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|||| ||| || || ||||| ||||| | ||| || || ||||| | ||| ||||| |||
Sbjct 4347 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 4288
Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
||| || |||| | || | | | | || || |||||||| | || || ||
Sbjct 4287 TGAATCTTC-GCTTTAACGTTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGT 4229
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || || ||||| ||||||||||| |||||
Sbjct 4228 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 4196
>seq8442
Length=60656
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||| | || ||||| ||||| || ||||||||||| ||||| || | |
Sbjct 43805 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATC-TCC 43863
Query 45170 A---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
| ||| ||| |||| || |||||||| || ||||| || | || ||||| ||| |||
Sbjct 43864 AAGGGTT--CGACCGTCCTCGAGTTGTTTACCAGCGAAGATGAGCCTCTGTTCGTCTGGA 43921
Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286
|| | || ||||| || || || ||| || | | | | |||| | |||
Sbjct 43922 GGGATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGGTGTCTGAGCTCTCA 43981
Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || | |||||| || || || || || || ||||||| ||||||||
Sbjct 43982 ACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAACTATTTGCAT 44031
>seq5576
Length=16168
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||||||| | | |||||||| || || |||||| || |||||||| || |
Sbjct 1255 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 1314
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || |||| || || ||||| ||||| || || | || |||||||| |||||
Sbjct 1315 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 1374
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || ||||| || || ||| || | ||| |||| | || |||
Sbjct 1375 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCTACGGTGTCGGAGCTTTCGACC 1434
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | || || ||||||||||| ||||| ||||| |||||||||||
Sbjct 1435 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 1481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394936648979275
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