Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq18099 152 5e-32 >seq18099 Length=159039 Score = 152 bits (168), Expect = 5e-32 Identities = 550/852 (65%), Gaps = 15/852 (2%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| || ||||| || ||||| || |||| | ||| Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | ||| | |||||||| || | || || | || Sbjct 20884 CTCCATCCAATCAAACGGATTACTC-ACACCATACACTTTACCATACCCAAGCGCACCTA 20826 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 || |||||||||| ||||||||||| ||| ||| || |||| |||||| || | | Sbjct 20825 ACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA 20766 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | || ||| ||| | || || || || || | || Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706 Query 14151 TAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 | | | | |||| | | ||| || | | | | || |||| ||||| || Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACA-GAGTATAAATCAAACAAGCG 20647 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 |||||||| ||||| || || ||||| || | ||||| || || ||||| || ||| Sbjct 20646 AAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGC 20587 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || | ||| ||||| || | ||| || || | | ||| || || || |||||||| || Sbjct 20586 ATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCT 20527 Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCC 14387 ||||| ||| ||||||| | ||||| | || | ||| | || || |||| Sbjct 20526 TCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGATCC 20472 Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 | | ||||||||| || ||| || ||| | || || ||||| || ||| |||| Sbjct 20471 AAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATA 20412 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 |||| || | ||||| || | |||||||| || | ||| | |||||| || | Sbjct 20411 AATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTG 20352 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 | || || || || ||||| || || || || || || | ||||| || ||||| Sbjct 20351 AATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTA 20292 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | ||||| |||| | || | ||||| || || || ||| || || || | Sbjct 20291 CATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 20232 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT--CGGC 14685 | || | || || ||| || |||| | ||| | | | |||| |||| ||| | ||| Sbjct 20231 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCACGGT 20172 Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745 | || | || ||||| ||||| || | ||||| || || | ||||| || || Sbjct 20171 T--GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTA 20114 Query 14746 CATTACCCATAT 14757 |||| |||| || Sbjct 20113 CATTTCCCAGAT 20102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482172106317000