Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 152 5e-32
>seq18099
Length=159039
Score = 152 bits (168), Expect = 5e-32
Identities = 550/852 (65%), Gaps = 15/852 (2%)
Strand=Plus/Minus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
||| ||||| |||| |||||| || ||||| || ||||| || |||| | |||
Sbjct 20944 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTTATCAA 20885
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030
||||| ||||||| ||||| | ||| | |||||||| || | || || | ||
Sbjct 20884 CTCCATCCAATCAAACGGATTACTC-ACACCATACACTTTACCATACCCAAGCGCACCTA 20826
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
|| |||||||||| ||||||||||| ||| ||| || |||| |||||| || | |
Sbjct 20825 ACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACGATTCATCCCAACCA 20766
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
||||| | || ||| ||| | || || || || || | ||
Sbjct 20765 ACGCACAAGGAAGCGCGTCACATACAAACTCTCTCTCAATCTCAACCGCATCACACACAA 20706
Query 14151 TAATCGTAATAATTTCATTA-GAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209
| | | | |||| | | ||| || | | | | || |||| ||||| ||
Sbjct 20705 TCGACTTCACTCTTTCCTCACTAAGCTTCGTACGTAACA-GAGTATAAATCAAACAAGCG 20647
Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269
|||||||| ||||| || || ||||| || | ||||| || || ||||| || |||
Sbjct 20646 AAATCACAGTGAAGACCTTCGTCTCTTGAGATTAACTCGTTAGAGAAAGTTAAACCAGGC 20587
Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329
|| | ||| ||||| || | ||| || || | | ||| || || || |||||||| ||
Sbjct 20586 ATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCT 20527
Query 14330 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCC 14387
||||| ||| ||||||| | ||||| | || | ||| | || || ||||
Sbjct 20526 TCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGATCC 20472
Query 14388 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447
| | ||||||||| || ||| || ||| | || || ||||| || ||| ||||
Sbjct 20471 AAGTCATAGCCCATTGAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATA 20412
Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507
|||| || | ||||| || | |||||||| || | ||| | |||||| || |
Sbjct 20411 AATGATCTCTTTCTTTGTTATCTTTGATGTATGTGTCGAGAAGAAGAGAATACATCTCTG 20352
Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567
| || || || || ||||| || || || || || || | ||||| || |||||
Sbjct 20351 AATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTA 20292
Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627
| ||||| |||| | || | ||||| || || || ||| || || || |
Sbjct 20291 CATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 20232
Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT--CGGC 14685
| || | || || ||| || |||| | ||| | | | |||| |||| ||| | |||
Sbjct 20231 AAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCACGGT 20172
Query 14686 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATA 14745
| || | || ||||| ||||| || | ||||| || || | ||||| || ||
Sbjct 20171 T--GTCTTGTGAGAGATCGACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTA 20114
Query 14746 CATTACCCATAT 14757
|||| |||| ||
Sbjct 20113 CATTTCCCAGAT 20102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482172106317000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |