Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq25811 96.9 3e-15
seq28288 91.5 1e-13
seq14351 89.7 4e-13
seq5576 86.0 5e-12
seq7697 84.2 2e-11
seq4225 82.4 6e-11
>seq25811
Length=7539
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || || | |||||| ||||| ||||| |||||||||||||| ||
Sbjct 478 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 419
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || || ||| ||||||||||| |||||| |||| || || || || ||| ||
Sbjct 418 AAGAGTACAACCATCCTCCAATTGTTTACCCGCAAAGATCAGCCTCTGCTGGTCCGGAGG 359
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||||||||| || | | |||||| | ||| |||||| |||
Sbjct 358 GATTCCTTCCTTATCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCTGAACTTTCGAC 299
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
| || ||| ||| | ||||| || | || |||| ||| ||||||
Sbjct 298 CTTAAGGGTTATGGTCTTGCCTGTAAGAGTCTTTATAAAGATTTGC 253
>seq28288
Length=9629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || || | |||||| ||||| ||||| |||||||||||||| ||
Sbjct 4846 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 4787
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| || ||| || | |||||| || || |||| ||||| || || ||| ||
Sbjct 4786 TAATGTCCGACCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 4727
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||||| || ||| | |||||| | ||| |||||| | |||
Sbjct 4726 GATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATAGTGTCTGAGTTCTCAAC 4667
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||| || |||| || || | ||||| ||||| || |||||
Sbjct 4666 TTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 4619
>seq14351
Length=15190
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || || | |||||| ||||| ||||| |||||||||||||| ||
Sbjct 4845 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGC 4786
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| || ||| || | ||||| || || |||| ||||| ||||| ||| ||
Sbjct 4785 TAATGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGGTCCGGTGG 4726
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275
| |||||||| || ||| | ||| || | ||| || | ||| || |||
Sbjct 4725 GATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTATCAATCGTAT--CCGAGCTTTCG 4668
Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||||| |||| || ||||| || || ||| | || |||||
Sbjct 4667 ACTTCAAGAGTGATGGTTTTACCCGTCAAAGTCTTGACAGATATCTGCAT 4618
>seq5576
Length=16168
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||||||||||||| ||||| || ||||| || ||
Sbjct 1027 CCACCACGAAGACGAAGAACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCCGCA 1086
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||| || | ||||| || ||| ||||||| || ||||| ||| ||
Sbjct 1087 AGAGTACGGCCATCCTCTAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 1146
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||| ||||| ||| | |||||| | ||| ||||| | |||
Sbjct 1147 ATTCCTTCTTTATCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACC 1206
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || ||| ||||||| || | ||||| ||||| ||||||||
Sbjct 1207 TCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 1253
>seq7697
Length=17472
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181
||| ||||| || ||||| || ||||||||||| || | || | | |||||| | |||
Sbjct 10900 GTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGCTAGAGTCCTTCCATCTTCAAGTTG 10959
Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241
|| || || ||||||||||||| |||||| || | || || || || || |
Sbjct 10960 CTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATCTT 11019
Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301
| |||||| | | | || ||| | ||| |||| |||||| | || |||||
Sbjct 11020 TGCCTTGACGTTATCGATCGTATCAGAGCTCTCAACCTCAAGAGTGATGGTCTTTCCGGT 11079
Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325
||| || || ||||| ||||||||
Sbjct 11080 CAAAGTCTTGACAAAGATTTGCAT 11103
>seq4225
Length=52512
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | || || || |||| ||||| ||||||||||| || |||||||| || ||
Sbjct 2734 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGC 2793
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| | | ||||| |||||||| || ||| |||| | | ||| || ||| ||
Sbjct 2794 GAGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGG 2853
Query 18218 CACGCCTTCCTTATC 18232
| |||||||| ||
Sbjct 2854 AATTCCTTCCTTGTC 2868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379210965837375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |