Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25811 96.9 3e-15 seq28288 91.5 1e-13 seq14351 89.7 4e-13 seq5576 86.0 5e-12 seq7697 84.2 2e-11 seq4225 82.4 6e-11 >seq25811 Length=7539 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 478 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 419 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| ||||||||||| |||||| |||| || || || || ||| || Sbjct 418 AAGAGTACAACCATCCTCCAATTGTTTACCCGCAAAGATCAGCCTCTGCTGGTCCGGAGG 359 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| || | | |||||| | ||| |||||| ||| Sbjct 358 GATTCCTTCCTTATCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCTGAACTTTCGAC 299 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 | || ||| ||| | ||||| || | || |||| ||| |||||| Sbjct 298 CTTAAGGGTTATGGTCTTGCCTGTAAGAGTCTTTATAAAGATTTGC 253 >seq28288 Length=9629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 4846 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 4787 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||| || | |||||| || || |||| ||||| || || ||| || Sbjct 4786 TAATGTCCGACCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 4727 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | |||||| | ||| |||||| | ||| Sbjct 4726 GATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATAGTGTCTGAGTTCTCAAC 4667 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || | ||||| ||||| || ||||| Sbjct 4666 TTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 4619 >seq14351 Length=15190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 4845 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCAGC 4786 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||| || | ||||| || || |||| ||||| ||||| ||| || Sbjct 4785 TAATGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGGTCCGGTGG 4726 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | |||||||| || ||| | ||| || | ||| || | ||| || ||| Sbjct 4725 GATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTATCAATCGTAT--CCGAGCTTTCG 4668 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || ||||| || || ||| | || ||||| Sbjct 4667 ACTTCAAGAGTGATGGTTTTACCCGTCAAAGTCTTGACAGATATCTGCAT 4618 >seq5576 Length=16168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||||||||| ||||| || ||||| || || Sbjct 1027 CCACCACGAAGACGAAGAACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCCGCA 1086 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || ||| ||||||| || ||||| ||| || Sbjct 1087 AGAGTACGGCCATCCTCTAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 1146 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | |||||| | ||| ||||| | ||| Sbjct 1147 ATTCCTTCTTTATCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACC 1206 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| ||||||| || | ||||| ||||| |||||||| Sbjct 1207 TCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 1253 >seq7697 Length=17472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| ||||| || ||||| || ||||||||||| || | || | | |||||| | ||| Sbjct 10900 GTGGAGTGTAGACTCTTTCTGGATGTTGTAGTCTGCTAGAGTCCTTCCATCTTCAAGTTG 10959 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || || || ||||||||||||| |||||| || | || || || || || | Sbjct 10960 CTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATCTT 11019 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | | | || ||| | ||| |||| |||||| | || ||||| Sbjct 11020 TGCCTTGACGTTATCGATCGTATCAGAGCTCTCAACCTCAAGAGTGATGGTCTTTCCGGT 11079 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || ||||| |||||||| Sbjct 11080 CAAAGTCTTGACAAAGATTTGCAT 11103 >seq4225 Length=52512 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || || |||| ||||| ||||||||||| || |||||||| || || Sbjct 2734 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGTTGTAATCAGC 2793 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||| |||||||| || ||| |||| | | ||| || ||| || Sbjct 2794 GAGTGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCCGGTGG 2853 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 2854 AATTCCTTCCTTGTC 2868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379210965837375