Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18099 150 2e-31 seq17640 96.9 3e-15 seq24711 95.1 1e-14 seq16226 95.1 1e-14 seq4225 95.1 1e-14 seq28288 89.7 5e-13 seq14351 89.7 5e-13 seq27144 87.8 2e-12 seq18065 87.8 2e-12 seq7697 82.4 7e-11 >seq18099 Length=159039 Score = 150 bits (166), Expect = 2e-31 Identities = 394/592 (67%), Gaps = 13/592 (2%) Strand=Plus/Plus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| |||||||||||| | || ||| | || ||| | |||||||| || || || Sbjct 20069 AGATTCTGT-ATGTTTCCGATTCACTACCCACAGATCTGGGAAATGTACAAGAAAGCCGA 20127 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| || ||||||| ||||||||| || || || | || | || ||||| Sbjct 20128 AGCATCCTTCTGGACCGCCGAAGAAGTCGATCTCTCACAAGACAACCGTGACTGGGAAAA 20187 Query 57656 CCTCAAAGAATCTGAGA--GAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 ||||| || | |||| | | || || |||||||| | || || ||||||||||| Sbjct 20188 TCTCAACGA--CGGAGAACGTCACTTCATCAAACACGTACTCGCTTTCTTCGCCGCATCT 20245 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 || || || || ||| || | | | |||| ||| || ||||| | || Sbjct 20246 GACGGAATCGTACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGAA 20305 Query 57774 GCGAGATGC-TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 ||| | ||| || |||||||| ||| | || ||||| || | |||||||| |||||||| Sbjct 20306 GCGCG-TGCATTCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTC 20364 Query 57833 GCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGAT 57892 || || |||| || ||| | || || ||| | || | | | | ||| || || Sbjct 20365 TCTTCTTCTCGACACATACATCAAAGATAACAAAGAAAGAGATCATTTATTCCGTGCAAT 20424 Query 57893 CGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGC 57952 |||||| || || | ||||||| || | ||| | || | ||||| | | | Sbjct 20425 CGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGACTTGGATCGATGGATC 20484 Query 57953 -CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTT 58011 || || ||||| || | | | |||||||| || |||||||||||||| | Sbjct 20485 TCA----AACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCT 20540 Query 58012 CGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGT 58071 | || ||| | || || ||| | |||||||| || || ||||| || | || | Sbjct 20541 CTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTAACTT 20600 Query 58072 TTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 | |||||||| || || | ||||| ||||| || |||||| || || Sbjct 20601 TCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTTCGCTTG 20652 >seq17640 Length=82317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || ||||| |||| |||||| | || Sbjct 53146 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTTGAATCATCT 53205 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||||||||||| | || || |||||| Sbjct 53206 GATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAG 53265 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| |||||||| ||||| | |||||| ||| | || || ||| Sbjct 53266 CAACGTTTAATCTTCGCTGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTACAAC 53325 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| || |||||||| || ||| Sbjct 53326 ATCCAGAAGGAATCAACGCTTCATCTTGTCCTT 53358 >seq24711 Length=27656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || ||||| || ||||| | || ||||| || Sbjct 5336 ATGCAGATTTTCGTGAAGACTCTTACTGGCAAGACAATCACACTTGAAGTTGAGAGCTCT 5395 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || ||| |||||||| | || || |||||| Sbjct 5396 GATACTATTGATAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCACCGGACCAG 5455 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| |||||||| || ||| | || || | || || ||||| ||| Sbjct 5456 CAGCGTCTAATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGTACACTGGCGGATTACAAC 5515 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || || || || |||| || Sbjct 5516 ATTCAGAAAGAGTCAACCCTCCACTTGGTCCT 5547 >seq16226 Length=39664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || ||| | || ||||| || Sbjct 11136 ATGCAGATTTTCGTGAAGACTCTCACCGGAAAGACCATTACCCTTGAGGTTGAGAGCTCG 11077 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||||||| | || || |||||| Sbjct 11076 GACACAATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 11017 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| |||||||| || ||| | || || | ||| || || || ||| Sbjct 11016 CAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCTGACTACAAC 10957 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || |||| || Sbjct 10956 ATCCAGAAGGAGTCTACTCTCCACTTGGTCCT 10925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || || ||| | || ||||| || Sbjct 11364 ATGCAAATCTTCGTGAAGACCTTGACTGGTAAGACCATTACCCTTGAGGTTGAGAGCTCA 11305 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || |||||| ||||| | || || |||||| Sbjct 11304 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATCCCTCCGGACCAG 11245 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || | || | ||| || ||| Sbjct 11244 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCTTAGCCGACTACAAC 11185 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||| |||| Sbjct 11184 ATTCAGAAGGAGTCGACCCTTCACTTGGT 11156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 31183 TGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 ||||| | | ||||| || || || || ||||| || || || || |||||| |||| || Sbjct 12514 TGAATTACAGATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACCCTCGAGGT 12455 Query 31243 TGAACCGTCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGC 31301 ||| || |||| | || |||| | | | ||| | ||| |||||||| | | Sbjct 12454 GGAAAGTTCTGACACGATTGACAACGTTAAGGCTAAGA-TCCAGGATAAGGAAGGAATTC 12396 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATG 31360 | || || |||||| | | || |||||||| || || |||||||| | | | || || Sbjct 12395 CTCCGGATCAGCAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGA-TGGACGTACCTTG 12337 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || ||||||||||| |||| || || || | || ||| Sbjct 12336 GCGGATTACAATATCCAGAAGGAGTCGACTCTTCACTTGGTTCTCAGGCTTCGTGGTGGT 12277 Query 31421 A 31421 | Sbjct 12276 A 12276 >seq4225 Length=52512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || || ||| | || |||||| | || Sbjct 2961 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTTCG 2902 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||||| | || || |||||| Sbjct 2901 GACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACCAG 2842 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || || ||||| || |||||| | || | ||||| ||| Sbjct 2841 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGAAGAACACTCGCTGATTACAAC 2782 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || |||||| |||| || Sbjct 2781 ATCCAGAAAGAATCAACGCTTCATTTGGTTCT 2750 >seq28288 Length=9629 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| || ||| | || ||||| || Sbjct 4619 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAACTCA 4678 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| || || ||||||||||| | || || |||||| Sbjct 4679 GACACTATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 4738 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || |||||||| ||||| | || || | ||| || ||| || || || Sbjct 4739 CAGAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGGAC-ATTAGCGGACTACAA 4797 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || |||||||| || || || Sbjct 4798 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCT 4830 >seq14351 Length=15190 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || | || |||||| |||| || ||||| ||||| | || || ||| || Sbjct 4618 ATGCAGATATCTGTCAAGACTTTGACGGGTAAAACCATCACTCTTGAAGTCGAAAGCTCG 4677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || |||||||||||| | || || ||||| Sbjct 4678 GATACGATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAA 4737 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | ||||| |||||||| |||||| | || || | ||| || ||| || || || Sbjct 4738 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGGAC-ATTAGCTGACTACAA 4796 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || |||||||| || || || Sbjct 4797 CATTCAGAAAGAGTCAACTCTTCACCTTGTTCT 4829 >seq27144 Length=112545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || ||||| || |||||||| |||| |||||| Sbjct 90503 CAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAAT 90444 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | ||||| | || ||||||||||| | || || | Sbjct 90443 CATCGGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 90384 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || || || |||| ||||| || ||||| | |||||| ||| | || | Sbjct 90383 ATCAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACT 90324 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || || ||||| || ||||| || || ||| Sbjct 90323 ACAACATCCAGAAGGAATCAACACTTCACCTTGTCCTT 90286 >seq18065 Length=21122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| || ||| | || ||||| || Sbjct 12407 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 12466 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || || | |||| | | | || ||||| | || || ||||| Sbjct 12467 TACACCATTGACAATGTTAAGGCGGAGATTCAAG-ATAAAGAAGGGATCCCTCCGGACCA 12525 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG-ATTATA 31370 |||| | || || || || || |||||| | || || | |||| | |||| |||||| Sbjct 12526 GCAGAGACTTATCTTTGCCGGTAAACAGCTCGAGGATGGTCGGACTTT-AGCGGATTATA 12584 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||||||| || |||||| |||| ||| | ||||| || || Sbjct 12585 ACATTCTAAAAGAATCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGG 12633 >seq7697 Length=17472 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| || ||| | || || || || Sbjct 10191 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 10132 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||||||| | || || || ||| Sbjct 10131 GACACAATAGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 10072 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || | ||||| | |||| | ||||| ||| Sbjct 10071 CAGAGACTTATCTTCGCAGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 10012 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||||||||||||| |||| ||| Sbjct 10011 ATCCAGAAGGAATCGACTCTTCATTTGGTTCTT 9979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445606063398000